Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02135 and BL03824

See Amino acid alignment / Visit BSNT_02135 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_02135.1.5803.seq
#    -bsequence dna-align/BL03824___yqbG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02135-BL03824___yqbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02135-BL03824___yqbG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02135
# 2: BL03824___yqbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 404
# Identity:     267/404 (66.1%)
# Similarity:   267/404 (66.1%)
# Gaps:          49/404 (12.1%)
# Score: 749.5
# 
#
#=======================================

BSNT_02135         1 ATGCTCATTGAAC-CGACTGACG-TAGCCTCC--TATTCGGTCTA-TGAT     45
                     ||||    |||.| ||.|.|||| ||.|.|||  |||||.|| || |||.
BL03824___yqb      1 ATGC----TGATCACGCCCGACGATATCATCCAATATTCCGT-TATTGAA     45

BSNT_02135        46 CGGGTGAAAAACAGGCCGGAAGAGCTGCTGGCG-CAGGATATCATCGAGG     94
                     ...|||||||||.|||||.|.||..|||| ||| |||||||||.|.||.|
BL03824___yqb     46 GCCGTGAAAAACCGGCCGCAGGAATTGCT-GCGTCAGGATATCCTTGAAG     94

BSNT_02135        95 CGGAAGCAGAAGCGGCTCTCATCACGGGCCACCGCTTTGAAGACAGCTTG    144
                     |.|||||.|||||.|..|..||.|||||.|||||.|||..|||     ||
BL03824___yqb     95 CTGAAGCGGAAGCCGAGCAGATAACGGGGCACCGTTTTACAGA-----TG    139

BSNT_02135       145 -----TATGATCCGCTGCCCGGCAAGGTGAAGTTGGCTTTAGTAAAGCTT    189
                          ||||||||||||||.|..||||..|.|.|.|||||..|..||||.
BL03824___yqb    140 AAAAATATGATCCGCTGCCGGAAAAGGCAAGGCTCGCTTTGCTGCAGCTG    189

BSNT_02135       190 GCCCAGTATTTTGCGCTTG-TCAACAGCGATGAATCTGCCTCATCAA--G    236
                     ||.|||||.||||| .||| ..|||.|.||||||||  .||..|.||  |
BL03824___yqb    190 GCACAGTACTTTGC-ATTGAAAAACGGTGATGAATC--GCTTTTGAAAGG    236

BSNT_02135       237 CTATCAGTCTGAGAAAATGGGGGATTATTCCTACACGGTTTCCGGAGAA-    285
                     |||..|.|||||||||.||||.||.||.|||||.|||.||||  .|||| 
BL03824___yqb    237 CTACAAATCTGAGAAATTGGGAGACTACTCCTATACGCTTTC--AAGAAG    284

BSNT_02135       286 -GGCGGCATTCAGCG--GCCAGAGGTATATCATTTGCTCGAGGAGTTTAT    332
                      ||.|||.|  ||.|  |||.||.||.|||.|..|||||||.||.|||||
BL03824___yqb    285 CGGAGGCCT--AGTGAAGCCCGACGTCTATAAACTGCTCGAAGAATTTAT    332

BSNT_02135       333 CACGCCGGGCTACGCCCCTGAATC--CTCCAGACTGAAGGTGAGGTCTTT    380
                        .|..|..||      ||||||  .||  ||.|.||||||.|..|..|
BL03824___yqb    333 ---TCTTGATTA------TGAATCTGTTC--GATTCAAGGTGCGCCCGCT    371

BSNT_02135       381 ATGA    384
                     ||||
BL03824___yqb    372 ATGA    375


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