Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02131 and BL03828
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_02131___xkdE.1.5803.seq
# -bsequence dna-align/BL03828___xkdE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02131___xkdE-BL03828___xkdE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02131___xkdE-BL03828___xkdE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02131___xkdE
# 2: BL03828___xkdE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1582
# Identity: 1102/1582 (69.7%)
# Similarity: 1102/1582 (69.7%)
# Gaps: 161/1582 (10.2%)
# Score: 3716.5
#
#
#=======================================
BSNT_02131___ 1 ATGCACA---ATCAAACAGTCAGAGCAACTGTATTTAAAGCC----AATG 43
|||..|| |.|||||.||.||||| .||||.| |||.
BL03828___xkd 1 ATGTCCACTCAGCAAACGGTAAGAGC---------GAAAGTCATGAAATC 41
BSNT_02131___ 44 CCG------CGGCTCCTCAGACAAAGCAAATCTATGAAGATGACTTTTCT 87
||| ||| .|||...|||||.|||||.|||||||||.|.|||||.
BL03828___xkd 42 CCGTTTTCACGG-GCCTGTAACAAAACAAATATATGAAGATCAATTTTCG 90
BSNT_02131___ 88 GAGCTGTACGGAGAGGACATTATCGCTCCGCCCTACAATATCATCGAGCT 137
|||.|.|||||.||.||.||||||||||||||.||||||.|.|..||..|
BL03828___xkd 91 GAGATCTACGGCGATGATATTATCGCTCCGCCGTACAATTTGAAAGAATT 140
BSNT_02131___ 138 CAAAACTATTGCCGAATACTCGACCATTCTTCAGCAATGCATTGATGCGT 187
.|||.|.|||||||||||.||..|.||||||||||||||||||||.||.|
BL03828___xkd 141 GAAAGCCATTGCCGAATATTCTTCAATTCTTCAGCAATGCATTGACGCCT 190
BSNT_02131___ 188 ACAGAGTGAATATTACAGGCTTTGGATTCGATGTTGAGTACACATTTGAT 237
|.|.|..|||||||.|.||.||.||..|||||||.||.|||.|.||||||
BL03828___xkd 191 ATAAAACGAATATTGCGGGGTTCGGGCTCGATGTAGAATACGCTTTTGAT 240
BSNT_02131___ 238 GTCAACGCAAGTGATGT------CGATCAGGCAAAAAAGAAAAGAGCGGA 281
.||||||.....||||| ||||| |.||||||| ..||.||
BL03828___xkd 241 TTCAACGGGGCGGATGTGACGCCCGATC--GGAAAAAAG----CTGCTGA 284
BSNT_02131___ 282 AAAAGACTGGGCCAGACTCGAAGCCTTTTATAAATG------TCTTCACT 325
....||.|||.|.||.||.||||..||| || .|||||.|
BL03828___xkd 285 GTCCGATTGGACAAGGCTTGAAGATTTT------TGCCGCCACCTTCATT 328
BSNT_02131___ 326 TTGATGAATCAGCTGAAATGATTTTAGGC--TATGCCATCGAAGACAGAG 373
||||.|||||.|||||||..||||||.|| |||| ||.||.|||.|.|
BL03828___xkd 329 TTGACGAATCGGCTGAAACAATTTTAAGCCATATG--ATAGAGGACCGCG 376
BSNT_02131___ 374 AAAAAACAGGCAACGGATTTATGGAAGTGCTTCGCGACGGGGCGGGAAAA 423
|||||||.||.|||||.|||.||||.|||||..|..||||.|||||..|.
BL03828___xkd 377 AAAAAACCGGGAACGGGTTTTTGGAGGTGCTCAGAAACGGTGCGGGGCAG 426
BSNT_02131___ 424 CCTGCCGGCATCGAATATTTAGATGTGAAATATATGCGTGTATGCGGA-- 471
||.|||||.||.||||||.|.|||||.|||.|||||||.|||||||||
BL03828___xkd 427 CCGGCCGGAATTGAATATCTCGATGTCAAAAATATGCGGGTATGCGGATT 476
BSNT_02131___ 472 -GCAGGCGAGCCTGTAGAGGTTTCATTTG--TATATGAAGAAAACGGGAA 518
.|| ||.||..|.||.|||..|||.| ||.||| ||||||||
BL03828___xkd 477 GACA---GAACCGATCGAAGTTGAATTCGCCTACATG--GAAAACGG--- 518
BSNT_02131___ 519 AA----TGAAAAGGATTAAAAGGCAAAAACGCTTCCGAAAATATGTGCAG 564
| |.||||..||.||.|||.|.|||.|.|||||.|||||.||.|||
BL03828___xkd 519 -ATCGCTAAAAAACATCAAGAGGGAGAAAAGGTTCCGCAAATACGTTCAG 567
BSNT_02131___ 565 ATGATCAATGGAAAGAAAGTATTTTTTAAAGAATACGGCGATCCGCGAAA 614
|||||..|.||.|.||||||.|..||||||||.||||||||||||||...
BL03828___xkd 568 ATGATTGACGGCAGGAAAGTGTACTTTAAAGAGTACGGCGATCCGCGCGT 617
BSNT_02131___ 615 AATGGATATGCGCACAGGTGAATATGTAAACACATTGGCAGA-------- 656
.|||||||||..|||.||.||.|.|| ||| ||||||
BL03828___xkd 618 CATGGATATGACCACCGGAGAGTTTG-----ACA--GGCAGACTCCCCCT 660
BSNT_02131___ 657 ----GAAGTATCAAGCAAATGAAGCCATTCACCTCAAAATCGGAAGCGGC 702
|||| .||.||||||||.||.||..|.||||||||.||||||
BL03828___xkd 661 GAACGAAG-----CGCGAATGAAGCGATCCATTTTAAAATCGGCAGCGGC 705
BSNT_02131___ 703 GTATACGGTGTACCCCGCTGGATCGGCAATATTGTCAATTTATACGGAGC 752
||.|||||.||.||.|||||||||||.|||||||||||..|.|||||.||
BL03828___xkd 706 GTCTACGGCGTTCCGCGCTGGATCGGAAATATTGTCAACCTGTACGGGGC 755
BSNT_02131___ 753 CCGAAAAGCAGAAGAACTCAATTTTATGTATTTTAAGCAGGGGCGTCACG 802
.||.|||||.|||||.||.||||.||||||.||.|..||.||.||.||||
BL03828___xkd 756 GCGGAAAGCGGAAGAGCTGAATTATATGTACTTCAGACAAGGCCGGCACG 805
BSNT_02131___ 803 TCCCCGCTGCGATTACAGTGGAAAACGGGATGCTGTCTGAAGCTTCTTAC 852
|.||.||.|..|||||.||.||||||||.|||||.||.||.|||||.|||
BL03828___xkd 806 TACCTGCCGTCATTACGGTTGAAAACGGCATGCTCTCAGAGGCTTCCTAC 855
BSNT_02131___ 853 CGGGAGCTGCAGGAATACATGAATGATCTT-GAAGGCGTGGAAAACGCCC 901
.|.||||||||||||||.|||||.|| ||| |||||.||.|||||.||||
BL03828___xkd 856 AGAGAGCTGCAGGAATATATGAACGA-CTTGGAAGGGGTTGAAAATGCCC 904
BSNT_02131___ 902 ATAAATTTCTCCTGATCGAAGCGGAAGGAATCGCAAAAGAAAAGGATCTC 951
|.||||||.|.||||||||||||||.|||||||||.|.|||||.||..|.
BL03828___xkd 905 ACAAATTTTTGCTGATCGAAGCGGAGGGAATCGCACAGGAAAAAGACATT 954
BSNT_02131___ 952 CACGGAGGCGAGGATATTACGCCGGTTTCCGTGGAAATCAAATCCTTGGC 1001
|||||..||.||||.|||||||||||....|||||.|||||||||.|.||
BL03828___xkd 955 CACGGCAGCCAGGACATTACGCCGGTGAAGGTGGACATCAAATCCCTCGC 1004
BSNT_02131___ 1002 GGAAATTCTCCAAAACGACGCCTTGTTTCTTGAATACGATGAAAAAAGCA 1051
.||||||.|.||..|.||.||..|||||||||||||.||.||.||||.|.
BL03828___xkd 1005 CGAAATTTTGCAGGAAGATGCGCTGTTTCTTGAATATGACGAGAAAACCC 1054
BSNT_02131___ 1052 GAAATAAGCTGCGTTCCGCGTTCCGCCTCCCGCCGCTGTATACAGGCGAG 1101
|.|||||..|.||.||..|.|||.|.|||||||||||.||.||.||.||.
BL03828___xkd 1055 GGAATAAAATCCGCTCTTCCTTCAGGCTCCCGCCGCTCTACACCGGTGAT 1104
BSNT_02131___ 1102 GCTCAGGAATACAACCGGGCGACAGCTGATACTGCTAGAAAAATTACGGA 1151
||.||.|||||.|||.||||||||||.|||||.||..|.|||||.||.||
BL03828___xkd 1105 GCCCATGAATATAACAGGGCGACAGCCGATACCGCCCGCAAAATCACCGA 1154
BSNT_02131___ 1152 GGAGCAGGTTTTTCAGCCGGAGCGAAAAACACTCGTGAAT----AAACTG 1197
.||.|||||||||.|.||||||||.||||.| |..|| ||.|||
BL03828___xkd 1155 AGAACAGGTTTTTGAACCGGAGCGGAAAATA----TTGATCGGCAAGCTG 1200
BSNT_02131___ 1198 AACACGCTGCTTTTGCCG-GAGCTGAA---TATCCATGACGTCAGGCTGA 1243
||.|||||| |||..||| ||..|.|| |.||| |||..||||| .
BL03828___xkd 1201 AATACGCTG-TTTCTCCGCGATTTAAACATTTTCC---ACGCGAGGCT-C 1245
BSNT_02131___ 1244 CA-TTAAAAGGACCGGACTTTCGTGATCCGCTTGAGATTGCGAAGGTGCT 1292
|| .|.|||||||||||||||||.||||||||||||||.||.||.|||||
BL03828___xkd 1246 CAGCTGAAAGGACCGGACTTTCGCGATCCGCTTGAGATCGCAAAAGTGCT 1295
BSNT_02131___ 1293 CGGTCCTTTTATTACA-GCAGGAGCGGTCTCGCCGAATGATTTACGCGAC 1341
||||||||||||| || ||||||||.||.||..|.||||||||.||||||
BL03828___xkd 1296 CGGTCCTTTTATT-CAGGCAGGAGCAGTATCTGCAAATGATTTGCGCGAC 1344
BSNT_02131___ 1342 CTTGCCGGACGGGTGCTTGGCAAAACACTGGAGGAGTGGCCGGAGGA--C 1389
||.|||||..|.|||||.|||||.||.||.||.||.||||||||||| .
BL03828___xkd 1345 CTGGCCGGCAGAGTGCTCGGCAAGACGCTAGATGAATGGCCGGAGGAAGA 1394
BSNT_02131___ 1390 ATTTATAAACGGCCTG---------CAGGACA-------------GGATG 1417
|||.|..| |||| | |||||.| |||.|
BL03828___xkd 1395 ATTCAGCA--GGCC-GCTCGTTTACCAGGAAAGCTCAAAGCGTGCGGAAG 1441
BSNT_02131___ 1418 CGGAA--AAGA-CAAACCTGACTGCGCTCATGCAGGA----GTTGAAAGA 1460
||||| |.|| ||...|||.|||..| ||||||| ||.||.|
BL03828___xkd 1442 CGGAAGCAGGAGCATTGCTGCCTGAAC---TGCAGGAAGCCGTCGAGA-- 1486
BSNT_02131___ 1461 AAGCATCG-AAGATATCA---AAACGTCCTGA 1488
|||.| ||.|.|||| |||.|...|||
BL03828___xkd 1487 ---CATTGAAACAGATCACTGAAAGGAGGTGA 1515
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