Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02123 and BL03833

See Amino acid alignment / Visit BSNT_02123 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_02123___xkdD.1.5803.seq
#    -bsequence dna-align/BL03833___xkdD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02123___xkdD-BL03833___xkdD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02123___xkdD-BL03833___xkdD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02123___xkdD
# 2: BL03833___xkdD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity:     228/385 (59.2%)
# Similarity:   228/385 (59.2%)
# Gaps:          77/385 (20.0%)
# Score: 563.0
# 
#
#=======================================

BSNT_02123___      1 GTGAAAGTGTTGGCAAAGACAAAACAGGCAGAGAAAAGCCCTGCGCCGTG     50
                     ||||||        ||.|| ||...||||   |.|.|||||..|.||.||
BL03833___xkd      1 GTGAAA--------AACGA-AAGTGAGGC---GTACAGCCCATCACCATG     38

BSNT_02123___     51 GCGTGCTGTCCCATGCGGGGATACGAA-ACCGA--TCTATATTTATTCAG     97
                     |||.|..|||..|         ||.|| |||||  |.||.||||||||||
BL03833___xkd     39 GCGCGTCGTCAGA---------ACAAATACCGACGTATACATTTATTCAG     79

BSNT_02123___     98 CTTACAGTGAAGAAGAAAAAGAAA-GATTCCCATATTCAAACGGACGGCT    146
                     |.|||||..|||..| |||||||| |.||..|.|||||.||||||.||.|
BL03833___xkd     80 CATACAGCAAAGCCG-AAAAGAAACGGTTTTCTTATTCCAACGGAAGGGT    128

BSNT_02123___    147 GATTGCCGCTGTATTTGACCTTAGCTCTTATTC---GCAAAAAAGCAATG    193
                     |||||||...||....|||...|||.|.|||||   |.|||||   ||||
BL03833___xkd    129 GATTGCCAAAGTCGCCGACTACAGCGCATATTCCAAGGAAAAA---AATG    175

BSNT_02123___    194 -CCGCTTTGATGGCCGCTGCGCCTGAATTGCTG--------GAAGCGTCT    234
                      |||| ||.||.||.||.||.||.|||.||.||        ||||| || 
BL03833___xkd    176 CCCGC-TTAATCGCTGCAGCTCCCGAACTGTTGACCGCAGTGAAGC-TC-    222

BSNT_02123___    235 AAAGCAGCACTTGATTTTCTGAAAGGGAATTCTGTTCATTCAAAG-GA--    281
                           .|.||||..|.|.|| |||.|||..|.|..|.||||.|| ||  
BL03833___xkd    223 ------ACGCTTGCCTATTTG-AAGCGAAAACGGCCCGTTCACAGCGATT    265

BSNT_02123___    282 -----GCGCATCATTCTG------CTATTAGAAAAAGCTGAAGCAAGCGC    320
                          |.|.||||.| ||      .|.||||||||||..|..||||..| 
BL03833___xkd    266 CAGTTGAGAATCAAT-TGAAGAATATTTTAGAAAAAGTCGTCGCAAAAG-    313

BSNT_02123___    321 TGCACCGAA----AAGGGGAGGAAAAGAAACATGA    351
                         |.|||    |||.||||||||  .||.||||
BL03833___xkd    314 ----CAGAATTTGAAGAGGAGGAAA--CAAGATGA    342


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