Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05901 and BL03843

See Amino acid alignment / Visit BSNT_05901 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05901___licA.1.5803.seq
#    -bsequence dna-align/BL03843___licA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05901___licA-BL03843___licA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05901___licA-BL03843___licA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05901___licA
# 2: BL03843___licA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 359
# Identity:     241/359 (67.1%)
# Similarity:   241/359 (67.1%)
# Gaps:          55/359 (15.3%)
# Score: 794.5
# 
#
#=======================================

BSNT_05901___      1 GTGAAT----GAGGAAATGGAACAAATCATTTTTCAAATCATCCTTCACG     46
                         ||    ||||||.|||||||||..||.||||||||.||||||||||
BL03843___lic      1 ----ATGTCCGAGGAATTGGAACAAACGATATTTCAAATTATCCTTCACG     46

BSNT_05901___     47 GAGGAAACGGTAGAAGC-TCCGCAATGGAGGCCATTGCCGCTGCGAAAAG     95
                     ||||||||||.||.||| |..|| |||||.||.||.||||..||.||||.
BL03843___lic     47 GAGGAAACGGCAGGAGCTTTTGC-ATGGAAGCGATAGCCGAAGCCAAAAA     95

BSNT_05901___     96 CGGCGA---CGCAG----AAGAAGCGCGGAAAAAGCTTCAAGACGCTGCT    138
                     .||.||   |||||    || |||      |||||.|.|..|..||||..
BL03843___lic     96 GGGAGATTTCGCAGCTGCAA-AAG------AAAAGATCCGGGCGGCTGAC    138

BSNT_05901___    139 GAAGAATTG-TCAAAAGCCCATCATTATCAGACAGAGCTGATCCAAAATG    187
                     ||||||.|| || |..||.|||||.|.||||||||...||||.|||||||
BL03843___lic    139 GAAGAACTGATC-AGGGCGCATCACTTTCAGACAGCTTTGATTCAAAATG    187

BSNT_05901___    188 AAGCG--GGCGGAGAAAAGACGGAAATGACGCTTCTGATGGTTCATGCAC    235
                     |||||  ||..|.||||  ||.|||....|.||.||.|||.|||||||.|
BL03843___lic    188 AAGCGAAGGGTGCGAAA--ACCGAACCTTCACTGCTCATGATTCATGCCC    235

BSNT_05901___    236 AGGATCATTTAATGAATGCAATGACAGTGAAGGATATGGCTGCAGAGATC    285
                     |||||||||||||||||||.|||||..||||.|||.||||.||.|||||.
BL03843___lic    236 AGGATCATTTAATGAATGCGATGACCATGAAAGATTTGGCCGCGGAGATT    285

BSNT_05901___    286 ATTGAGTTATATGAAAAAAT-------CACCGAG----CAAAGGGGAGCA    324
                     .|.|||.|.|||||||||||       |||.|||    |||         
BL03843___lic    286 GTCGAGCTCTATGAAAAAATGAATATCCACGGAGGTGTCAA---------    326

BSNT_05901___    325 AGCATATGA    333
                          .|||
BL03843___lic    327 -----TTGA    330


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