Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05857 and BL03865

See Amino acid alignment / Visit BSNT_05857 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:56
# Commandline: needle
#    -asequence dna-align/BSNT_05857___thiM.1.5803.seq
#    -bsequence dna-align/BL03865___thiM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05857___thiM-BL03865___thiM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05857___thiM-BL03865___thiM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05857___thiM
# 2: BL03865___thiM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity:     535/865 (61.8%)
# Similarity:   535/865 (61.8%)
# Gaps:         158/865 (18.3%)
# Score: 1661.0
# 
#
#=======================================

BSNT_05857___      0 --------------------------------------------------      0
                                                                       
BL03865___thi      1 ATGAATATGGAAGATGCCGCAAGGGGAATTGAGTTAGTCAGAAAGCAAAA     50

BSNT_05857___      1 -------GTGCATAGCATAACCAACAATGTCGTAACGAATTTCACAGCAA     43
                            ||.||.|..||.||.|||||||||||.||.||.||.||.||||
BL03865___thi     51 ACCGCTCGTACACAATATGACAAACAATGTCGTCACCAACTTTACGGCAA    100

BSNT_05857___     44 ACGGCCTGCTCGCGCTCGGCGCATCGCCCGTTATGGCGTACGCAAAAGAA     93
                     ||||..||||.||.||||||||||||||.||.||||||||.||.|..|||
BL03865___thi    101 ACGGTTTGCTGGCTCTCGGCGCATCGCCGGTGATGGCGTATGCGAGGGAA    150

BSNT_05857___     94 GAGGTCGCCGATATGGCGAAAATTGCGGGTGCACTCGTTTTAAATATCGG    143
                     ||||.||||||.|||||.||.||.||.||.||.||.||..|.||.|||||
BL03865___thi    151 GAGGCCGCCGACATGGCAAAGATCGCCGGAGCCCTTGTGCTGAACATCGG    200

BSNT_05857___    144 AACGCTGAGCAAGGAGTCAGTCGAAGCGATGATCATCGCGGGAAAATCAG    193
                     .|||||.|||...||.||.||.|||||||||||.||.||.|||||.||||
BL03865___thi    201 CACGCTCAGCCGTGAATCTGTTGAAGCGATGATTATTGCAGGAAAGTCAG    250

BSNT_05857___    194 CTAATGAACATGGCGTTCCCGTCATTCTTGATCCTGTCGGTGCCGGAGCA    243
                     |||||||||||||.||.||.||.|||.|||||||.||||||||.||.||.
BL03865___thi    251 CTAATGAACATGGGGTGCCGGTTATTTTTGATCCGGTCGGTGCGGGGGCG    300

BSNT_05857___    244 ACACCGTTCCGCACTGAATCGGCACGTGACATCATTCGTGAGGTGCGCCT    293
                     ||.|||||.||.||.||||||||.|..|..|||||.||..|.|||....|
BL03865___thi    301 ACGCCGTTTCGAACGGAATCGGCTCAAGCGATCATGCGCAAAGTGAAGGT    350

BSNT_05857___    294 TGCTGCAATCAGAGGAAATGCGGCGGAAATTGCCCATAC-CGTCGGCGTG    342
                     |.||||..|||||||.|||||.||||||||||||.|.|| |.|.||   |
BL03865___thi    351 TTCTGCCGTCAGAGGCAATGCTGCGGAAATTGCCAACACGCTTGGG---G    397

BSNT_05857___    343 ACCGACTGGCTGATCAAAGGTGTTGATGCGGGTGAAGGCGGAGGCGACAT    392
                     | .|||||||||||||||||.||.||.||||||||||...|.|||||||.
BL03865___thi    398 A-AGACTGGCTGATCAAAGGCGTGGACGCGGGTGAAGAGAGCGGCGACAG    446

BSNT_05857___    393 CATCCGGCTGGCTCAGCAGGCGGCACAAAA----GCTAA----------A    428
                     .|  |||  .||||        |||.||||    ||.||          |
BL03865___thi    447 AA--CGG--AGCTC--------GCAAAAAAAGCCGCGAAATTATGGGATA    484

BSNT_05857___    429 CA-CGGTCATTGCGATAACTGGTGAAGTTGATGTCATAGCCG-----ACA    472
                     || |.|||||   .|||||.||||..|..||.||.|||.|.|     |||
BL03865___thi    485 CAGCAGTCAT---CATAACCGGTGCTGAAGACGTGATAACGGATGGTACA    531

BSNT_05857___    473 CGTCACATGTATACACCCTTCAT----AACGGCCACAAGCTGCTGACAAA    518
                        .|.|.||||||      |.|    |||||.||..|||||||.||.||
BL03865___thi    532 ---AAAACGTATAC------CGTGGGCAACGGACATCAGCTGCTTACGAA    572

BSNT_05857___    519 AGTGACAGGCGCCGGTTGCCTGCTGACTTCCGTCGTCGGTGCGTTTTGCG    568
                     ||||||.||..|.||.|||.||.|.||.||.|||.|||||||||||||||
BL03865___thi    573 AGTGACGGGGACAGGCTGCTTGTTTACCTCTGTCATCGGTGCGTTTTGCG    622

BSNT_05857___    569 CTGTGGAAGAAAATCCATTGTTTGC--TGC-----TAT-TGTTGCCATTT    610
                     |.||.|||.||.|     .||||||  |||     ||| ||..|||   .
BL03865___thi    623 CCGTTGAAAAAGA-----CGTTTGCCGTGCCGCTGTATCTGCAGCC---G    664

BSNT_05857___    611 CTTCTTATGGGGTCGCCGCTCAGCTTGCCGC----AAAGC----AGACGG    652
                     |||.||||||....||.||..||.|.|||||    |||.|    ||.|||
BL03865___thi    665 CTTTTTATGGAACAGCGGCCGAGTTGGCCGCGGCGAAAACGGAAAGCCGG    714

BSNT_05857___    653 CTGACCAAGGCCCTGGAAGCTTTCAGATTGAATTGCTGAACAAGCTTTCA    702
                             ||.||.|||||.||.||.||.||.||..||||..|||||.|.
BL03865___thi    715 --------GGGCCCGGAAGTTTCCAAATCGAGTTTTTGAATCAGCTTGCT    756

BSNT_05857___    703 ACTGTTACTGAA-CAA--GACGTCCAAGAATG-GGCGACTAT-AGAAAGG    747
                     .|.||   |||| |.|  ||..|..|||||.| ||| |..|| |||.|||
BL03865___thi    757 GCCGT---TGAAGCTATGGATATAAAAGAACGCGGC-AGGATCAGAGAGG    802

BSNT_05857___    748 GTGACTGTCTCATGA    762
                     ..||       ||.|
BL03865___thi    803 TGGA-------ATAA    810


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05857 and BL03865

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
