Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05819 and BL03890

See Amino acid alignment / Visit BSNT_05819 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05819___sacP.1.5803.seq
#    -bsequence dna-align/BL03890___sacP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05819___sacP-BL03890___sacP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05819___sacP-BL03890___sacP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05819___sacP
# 2: BL03890___sacP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1410
# Identity:    1041/1410 (73.8%)
# Similarity:  1041/1410 (73.8%)
# Gaps:          54/1410 ( 3.8%)
# Score: 3652.0
# 
#
#=======================================

BSNT_05819___      1 ATGGATT-ACAAAGAGACTGCAAAACGCCTCATTGAGCTTCTCGGAGGGA     49
                     || |||| |.|||||.|..||...|||.||.||..|||||||.||.||..
BL03890___sac      1 AT-GATTCATAAAGAAATCGCTGTACGTCTTATACAGCTTCTTGGCGGAG     49

BSNT_05819___     50 AAGAAAATATTATCAGCGCGGCTCATTGTGCAACAAGACTGCGTTTAGTG     99
                     ||||.|||.|.|||||.||.|||||||||||.|||||.||.|||||.|||
BL03890___sac     50 AAGATAATGTCATCAGTGCAGCTCATTGTGCGACAAGGCTTCGTTTGGTG     99

BSNT_05819___    100 ATGAAAGATGAATCAAAGATAGATCAAGCACAAGTAGAAGAGCTTGATGG    149
                     ||.||.||.|||.||||.||.||.||.|.|.|.||.||||||||.||.||
BL03890___sac    100 ATTAAGGACGAAGCAAAAATCGACCAGGAAAAGGTCGAAGAGCTGGAAGG    149

BSNT_05819___    150 CGTCAAAGGGGC--TTTCAGCAGCTCTGGCCAGTACCAGATCATTTTCGG    197
                     .||.|||||.||  |||||  ||||||||.||.||||||||.||||||||
BL03890___sac    150 TGTAAAAGGAGCCTTTTCA--AGCTCTGGTCAATACCAGATTATTTTCGG    197

BSNT_05819___    198 AACAGGCCTTGTGAATAAAGTATTCGATGCCTTTGCTAAAGAAGCTGATA    247
                     ||||||.|||||.||||||||.|..||....|||||.|||| ||||||  
BL03890___sac    198 AACAGGGCTTGTTAATAAAGTGTATGAACAGTTTGCCAAAG-AGCTGA--    244

BSNT_05819___    248 TCGAGCGTGAAGAACACGTAAA----TCATCA---GGATGCGGCAAAAGA    290
                        |.|.|||..|| |.|.|||    |||.||   .|||||.|||||.|.
BL03890___sac    245 ---ATCTTGACCAA-AAGGAAACGGTTCAGCACAGCGATGCCGCAAAGGG    290

BSNT_05819___    291 AAAGCTGAATCCCGCTGCGAGATTTGCGAAAACGCTTTCTAATATTTTTG    340
                     |||..|||||||....|||.||||||||||||||||.||.||||||||.|
BL03890___sac    291 AAAAATGAATCCTTTAGCGCGATTTGCGAAAACGCTGTCAAATATTTTCG    340

BSNT_05819___    341 TTCCAATCATCCCGGCTATTGTAGCCAGCGGCCTATTAATGGGATTGCTG    390
                     |.||||||||||||||.|||||.||.|||||..||||||||||..||.||
BL03890___sac    341 TGCCAATCATCCCGGCCATTGTTGCAAGCGGTTTATTAATGGGGCTGTTG    390

BSNT_05819___    391 GGTATGATCAATGCGTTTCATTGGAT-GAGCAAGGATTCTGCGCTTTTGC    439
                     ||.|||||.||.||.|||||.|||.| ||.| ..|||.|.|||||.|...
BL03890___sac    391 GGAATGATGAAGGCATTTCAGTGGGTCGATC-CTGATGCGGCGCTGTATA    439

BSNT_05819___    440 AGCTGCTTGATATGTTTTCAAGTGCAGCATTTATTTTCTTGCCGATTCTA    489
                     |..|||||||||||||.||.||.||.|||||||||.||.|.|||||..|.
BL03890___sac    440 AAATGCTTGATATGTTCTCGAGCGCGGCATTTATTATCCTTCCGATCTTG    489

BSNT_05819___    490 ATCGGGGTCAGCGCTTCAAAAGAGTTTGGCAGCAATCCATACTTGGGAGC    539
                     |||||.|||||.|||.|.||||||||||||||||||||.|||.||||.||
BL03890___sac    490 ATCGGTGTCAGTGCTGCGAAAGAGTTTGGCAGCAATCCTTACCTGGGGGC    539

BSNT_05819___    540 GGTCATCGGGGGAATCATGATTCATCCGA-CTCTTTTAAATCCATGGGGA    588
                     .||..|.||.|||||..|.|||||.|||| || |.||.|||||.||||||
BL03890___sac    540 TGTACTTGGAGGAATTTTAATTCACCCGAGCT-TGTTCAATCCTTGGGGA    588

BSNT_05819___    589 TTGGCGGAA--GCGACACCTGATTACATGCATCTTTT-CGGATTTGATAT    635
                     .|.||  ||  ||..||||.|||...|||.| ||||| ||||.|..|.||
BL03890___sac    589 CTTGC--AACTGCATCACCGGATGTGATGGA-CTTTTACGGACTCAAAAT    635

BSNT_05819___    636 CGCGCTTCTCGGCTACCAGGGAACTGTTATCCCTGTCCTGCTTGCGGTGT    685
                     ||.|.|.||.|||||.||.|||||.|||.|.||..|..|||||||.||.|
BL03890___sac    636 CGAGATGCTTGGCTATCAAGGAACCGTTGTTCCAATTTTGCTTGCCGTAT    685

BSNT_05819___    686 ATGTGATGAGCAAGGTAGAGAAATGGACG--AGAAAAGTGGTTCCACATG    733
                     ||||||||||.||..|.||.|||  |.||  ||||.|.|.||||||.|||
BL03890___sac    686 ATGTGATGAGTAAAATCGAAAAA--GGCGTAAGAAGAATCGTTCCAAATG    733

BSNT_05819___    734 CGGTAGATTTGCTTGTTACACCATTTGTTACTGTAATTGTCACCGGG-TT    782
                     ||.|.|||.|..|.||.|||||.|||||.||..|.||| |||.|||| ||
BL03890___sac    734 CGATCGATCTATTAGTAACACCGTTTGTCACGATTATT-TCAACGGGATT    782

BSNT_05819___    783 TGTTGCTGTTATCGCGATTGGCCCTCTAGGCAGAGCGCTTGGCTCCGGCA    832
                     ..|||||.||||||||||.||.|||.||||.|||..||||||..|.||.|
BL03890___sac    783 CATTGCTTTTATCGCGATCGGTCCTTTAGGAAGAATGCTTGGTACAGGGA    832

BSNT_05819___    833 TTACGGTTGCTTTAACTTATGTGTATGACCATGCCGGTTTTGTTGCGGGC    882
                     |.|||.....||||||.||||||||||||..||||||...||||||.||.
BL03890___sac    833 TCACGAACATTTTAACATATGTGTATGACGTTGCCGGGCCTGTTGCCGGA    882

BSNT_05819___    883 CTGATTTTCGGGGGCACGTATTCACTCATCGTGCTGACAGGCGTTCATCA    932
                     ||||||||||||||.||.||.||.||.|||||.||.||.||.||.||.||
BL03890___sac    883 CTGATTTTCGGGGGAACATACTCGCTGATCGTTCTAACTGGTGTCCACCA    932

BSNT_05819___    933 TAGCTTCCATGCGATTGAGGCTGGGCTTATTGCAGATATAGGAAAAAACT    982
                     .||.|||||||||||||||||.||.|||||.||.|||||.||.|..||||
BL03890___sac    933 CAGTTTCCATGCGATTGAGGCCGGCCTTATCGCTGATATCGGCAGGAACT    982

BSNT_05819___    983 ACTTGCTGCCGATCTGGTCAATGGCGAATGTCGCACAGGGCGGGGCAGGT   1032
                     ||.||||.|||||||||||.|||.|.||||||||.||.||||||||.||.
BL03890___sac    983 ACCTGCTCCCGATCTGGTCTATGTCCAATGTCGCCCAAGGCGGGGCCGGA   1032

BSNT_05819___   1033 CTTGCCGTCTTCTTTATGGCGAAAAAG---GCAAAGACAAAAGAAATCGC   1079
                     ||||||||.||||||.||||   ||||   |||||.|||||||||||.||
BL03890___sac   1033 CTTGCCGTATTCTTTTTGGC---AAAGCGTGCAAAAACAAAAGAAATTGC   1079

BSNT_05819___   1080 GCTTCCGGCAGCATTTTCCGCTTTTCTCGGCATTACTGAGCCCGTCATAT   1129
                     ..|.||.||.||.||.||..||||||||||||||||.||.||.||.||.|
BL03890___sac   1080 TTTACCTGCCGCTTTCTCTTCTTTTCTCGGCATTACCGAACCTGTTATTT   1129

BSNT_05819___   1130 TCGGAGTCAATCTTCGCTACCGAAAACCGTTTATCGCCGCGATGATCGGA   1179
                     ||||.|||||.||.||.|||||....|||||||||||.||.|||..|||.
BL03890___sac   1130 TCGGTGTCAACCTCCGTTACCGCCGGCCGTTTATCGCGGCAATGGCCGGG   1179

BSNT_05819___   1180 GGCGCATTGGGTGGGGCATATGTCGTCTTTACACATGTAGCTGCAAACGC   1229
                     ||.||..||||.|..|||||.||.|||||||...||||.||.||||||||
BL03890___sac   1180 GGAGCGCTGGGAGCTGCATACGTTGTCTTTATGAATGTTGCAGCAAACGC   1229

BSNT_05819___   1230 TTACGGGTTAACGGGTATTCCGATGATCGCCATTGCGGCTCCGTTTGGCT   1279
                     .|||||.||.|||||.|||||||||||.||.||||..||.|||.||||..
BL03890___sac   1230 ATACGGTTTGACGGGAATTCCGATGATTGCGATTGTCGCCCCGCTTGGAA   1279

BSNT_05819___   1280 TCAGCAACTTGATTCACTATCTGATTGGCATGGCGATTGC-GGCAGTGTC   1328
                     |..|||||.||||.||||||.|.||.||.|||||||||.| |..|.||||
BL03890___sac   1280 TGGGCAACCTGATCCACTATTTAATCGGAATGGCGATTTCTGTGACTGTC   1329

BSNT_05819___   1329 AGCGTTCATCGCAGCATTTGTCATGAAG--ATTAATGAGGATGAGGAGAG   1376
                      ||.||.|||.||||.|||.||.|  ||  ||||||||.||.||      
BL03890___sac   1330 -GCATTTATCACAGCCTTTATCTT--AGGCATTAATGAAGACGA------   1370

BSNT_05819___   1377 GAAAAAATGA   1386
                     ||||||.|||
BL03890___sac   1371 GAAAAAGTGA   1380


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.