Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01381 and BL03899

See Amino acid alignment / Visit BSNT_01381 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_01381___yfiK.1.5803.seq
#    -bsequence dna-align/BL03899___yfiK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01381___yfiK-BL03899___yfiK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01381___yfiK-BL03899___yfiK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01381___yfiK
# 2: BL03899___yfiK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity:     390/801 (48.7%)
# Similarity:   390/801 (48.7%)
# Gaps:         300/801 (37.5%)
# Score: 738.5
# 
#
#=======================================

BSNT_01381___      1 ATG---ATTAAGATCATCATTACCGACGA----TCAGGATATCGTCAGAG     43
                     |||   |||||..|.||||||.|.||.||    |||    .||.|.||||
BL03899___yfi      1 ATGAAAATTAAAGTGATCATTGCGGATGACAATTCA----TTCATAAGAG     46

BSNT_01381___     44 AAGGGCTGG-----CATCCCTGCTCCAGCTCCGA-GAAGAGCTCGATGTG     87
                      |||||..|     |||     .|..|||.|..| ||.||..|.||.|||
BL03899___yfi     47 -AGGGCATGAAAATCAT-----ATTGAGCACTTATGATGAATTTGAAGTG     90

BSNT_01381___     88 ATCGCAACGGCGCGAAACGGACAGGAAGCCTT-----CGAAAAGGCGAA-    131
                     .|.||.||||.|         .||||.|.|||     ||    |.|||| 
BL03899___yfi     91 CTGGCGACGGTG---------GAGGATGGCTTGCAGGCG----GTCGAAT    127

BSNT_01381___    132 ------------AGAGCTGGAGCCGGATATCGTG------TTAATGGACA    163
                                 | |||||    .||||||  ||      ||.|||    
BL03899___yfi    128 TTTGCCGCGCCCA-AGCTG----TGGATAT--TGCACTCCTTGATG----    166

BSNT_01381___    164 TCCGCATGCCGGTTTCCAAC-GGGGTGGAG-GGAACAAAATTAATCACAA    211
                     |||||||||      ||||| .||.||||| ||               ||
BL03899___yfi    167 TCCGCATGC------CCAACATGGATGGAGTGG---------------AA    195

BSNT_01381___    212 GCT-CGCTGC------------CCGGCGTAAAGGTTTTGATGCTGACAAC    248
                     ||| |||.||            |.||||..|||..|||.||..|.|||||
BL03899___yfi    196 GCTGCGCGGCTCATTTCAGAAACGGGCGCCAAGCCTTTTATCTTAACAAC    245

BSNT_01381___    249 CTTT-------AAGGATTCAGAGCTGATTGCT--GAAGCGCTTGAAGAA-    288
                     .|||       |.|.||.||    |..|.|||  ||..||      ||| 
BL03899___yfi    246 GTTTGATGACGACGAATACA----TCGTCGCTGCGATACG------GAAC    285

BSNT_01381___    289 GGAGCAAGCGGGTACCTGCTGAAGGATATGTCG-------GC-------A    324
                     ||.||||..||.||..|||||||  |.|||.||       ||       |
BL03899___yfi    286 GGCGCAAAAGGCTATTTGCTGAA--AAATGCCGAACCCGAGCGAATCAGA    333

BSNT_01381___    325 GATACGATTGTAAAAGCGGTGATGACTGTTC---------ATTCTG--GC    363
                     ||..||||  ||||||.|        |||||         |||.||  ||
BL03899___yfi    334 GACGCGAT--TAAAAGTG--------TGTTCAACGGCCATATTGTGATGC    373

BSNT_01381___    364 -GGA-ATGGTGCTTCCGCCGGA----ATTGACTGCCCAAAT--GCTGA--    403
                      ||| ||    |.|||.|  ||    |||.|  |.||||.|  ||.||  
BL03899___yfi    374 AGGATAT----CATCCTC--GACAAGATTAA--GTCCAATTTGGCGGAGC    415

BSNT_01381___    404 ATGAATGGAAGCGTGAAAAACAGCTGAAAGGAA--TAAATGAGATAGAAA    451
                     ||.||  |||||                 ||||  ||    |||||||  
BL03899___yfi    416 ATAAA--GAAGC-----------------GGAACCTA----AGATAGA--    440

BSNT_01381___    452 AACCTAAGGAGCTGCTCGA---CCTG---ACAGAGCGCGAAATCGAAGTT    495
                                     |||   ||||   ||.||.|||||..|||...||
BL03899___yfi    441 ----------------CGAAAGCCTGTTTACCGAACGCGAGCTCGGGATT    474

BSNT_01381___    496 CTG--GCTGA--GCTTGGGTACGGGCTGAATAACAAAGAAATTGCCGAA-    540
                     .||  |||||  ||..|    .||||||...||.||||||||| .|||| 
BL03899___yfi    475 ATGGCGCTGATCGCCAG----AGGGCTGTCCAATAAAGAAATT-TCGAAG    519

BSNT_01381___    541 AAGCTTTACATTACAGAAGGCACAGTCAAAAACCACGTTT--CAA--ATA    586
                     .||||.|..||..|.|||||             .|||.||  |||  |||
BL03899___yfi    520 GAGCTGTTTATCTCTGAAGG-------------TACGATTGCCAATTATA    556

BSNT_01381___    587 TTATCAGCAAGCTGGCTGT---------CAGGG-----ACA--GAACCCA    620
                     || ||      ||.|.|.|         |||||     |||  |.||.||
BL03899___yfi    557 TT-TC------CTCGATTTTGGGGAAAACAGGGCTTGAACATCGGACGCA    599

BSNT_01381___    621 AGCCGCCATTTACT-------CGGT-CAGATATGGTGTATCTGTCTTTTG    662
                     |...||.|||||.|       |||| .||.||           .|||||.
BL03899___yfi    600 AATTGCGATTTATTATTTAACCGGTAAAGTTA-----------ACTTTTA    638

BSNT_01381___    663 A    663
                     |
BL03899___yfi    639 A    639


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