Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01380 and BL03900

See Amino acid alignment / Visit BSNT_01380 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_01380___yfiJ.1.5803.seq
#    -bsequence dna-align/BL03900.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01380___yfiJ-BL03900.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01380___yfiJ-BL03900.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01380___yfiJ
# 2: BL03900
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1426
# Identity:     633/1426 (44.4%)
# Similarity:   633/1426 (44.4%)
# Gaps:         593/1426 (41.6%)
# Score: 1073.0
# 
#
#=======================================

BSNT_01380___      1 ATGTATCTGTCCATTGTGAAAGAGGATAACTGGTTTGGATATGT----AT     46
                     |||.|..||...|||.||  |..||..|||||.|||     |||    ||
BL03900            1 ATGGAATTGCGGATTATG--ACCGGCAAACTGATTT-----TGTTGGGAT     43

BSNT_01380___     47 TTATAGCAGCAGGTGCTGCCATGTATGCAGCCAAT-CATGTTTTGCTGAC     95
                     ||||               |||.|||     |||| |.| ||||.|.|  
BL03900           44 TTAT---------------CATCTAT-----CAATGCGT-TTTTTCGG--     70

BSNT_01380___     96 AAAAGAGACAAATGCCATCTG-----------GTTCTGCCTGATTG----    130
                      ||||.||||      |||||           ||||.||||..|||    
BL03900           71 -AAAGTGACA------ATCTGCCGTGGCTTGTGTTCAGCCTTCTTGTTTA    113

BSNT_01380___    131 -----ATATTGCAA--TCGGCTTTTCGTTCGGATTTATCTTTCCCGGCAC    173
                          .|||  |||  ||||..||.||.|    ||||.||        |.
BL03900          114 CGTCTGTAT--CAACCTCGGGATTGCGAT----TTTACCT--------AA    149

BSNT_01380___    174 AGG--------------TTTGTTCATTATTATGCTT--TGTC--CGGTTG    205
                     |||              |||     |||||||..||  ||||  | .||.
BL03900          150 AGGAAAAACAAAAAAGCTTT-----TTATTATCATTTCTGTCATC-ATTT    193

BSNT_01380___    206 CGGTCGCCTTTTTTCTGCGGGGGT-----------------------TTC    232
                     |..|||  |||.||.|||.|..||                       |||
BL03900          194 CAATCG--TTTCTTATGCAGAAGTGCACCCCCTATTTATTTTATTCCTTC    241

BSNT_01380___    233 C------------TAAAAGAACAGC-----ATGGTCTGTCTTATGT----    261
                     |            |.||.||.||||     .|||.||| |..|.||    
BL03900          242 CTTTTACCCTGTGTGAAGGAGCAGCCGATTTTGGGCTG-CCGAAGTGGGC    290

BSNT_01380___    262 ----CTTTGCTCTATTTTATTTTTGATCGTTCTCATCCGTACATATGCGA    307
                         |||..|.|         ||..|||||||...||            .
BL03900          291 GGTACTTGCCGC---------TTCAATCGTTCCGGTC------------T    319

BSNT_01380___    308 TGTTCGGCAATGAATTTGTCATTGATCATTT-----GACTA-GC-ATGAC    350
                     ||||...|||||||          |.|||.|     |.||| || .||||
BL03900          320 TGTTTATCAATGAA----------AGCATCTCAGCGGTCTACGCGTTGAC    359

BSNT_01380___    351 ATTCG-TTGTC---TTTTGC-GGAGTCGTCGGCAAATTAATCCGCAAGCT    395
                     ...|| ||.||   |||||| |.|.|.|.||||||        ||.|  |
BL03900          360 GGCCGCTTTTCAATTTTTGCTGTACTGGGCGGCAA--------GCCA--T    399

BSNT_01380___    396 GTTGGATGCGCAGGATACGGCAA------AACAGCAGTTTCAGGAACTGA    439
                     |.||.| |||| ||||  .|.||      ||||.||..||   ||.|..|
BL03900          400 GATGCA-GCGC-GGAT--TGAAAAGCTTGAACATCATATT---GATCAAA    442

BSNT_01380___    440 CG----GAGTCC--CATCTGGCGCTGTC-----TGCTGC------ACATC    472
                     ||    |||.||  ||   |..||||.|     ||||||      |||  
BL03900          443 CGAGAAGAGACCTGCA---GAAGCTGACAAACATGCTGCGTGAAAACA--    487

BSNT_01380___    473 AGGAGCTCCATTTAT------ATGCGAAGCAGGT----TGAAGAGCTGAC    512
                     |.|||     |||||      ||.||||     |    |.|..|||    
BL03900          488 AAGAG-----TTTATCAGACAATCCGAA-----TATACTTATAAGC----    523

BSNT_01380___    513 TGCCATTTACGAGCGGAACAGAATGGCGCGGGAAATCCATGATACAGTGG    562
                          ||.|.|||||.|||.|..|..|.|.||||||.||.||||.|.|.|
BL03900          524 -----TTGAGGAGCGCAACCGGCTTTCCCAGGAAATACACGATAAAATCG    568

BSNT_01380___    563 GGCATAAAATGAC---GGCCCT------TCTCGTCCAGCTGC--AGCTTT    601
                     |.|||...|||||   .||.||      .||||  .|||.||  |||   
BL03900          569 GTCATTCCATGACAGGAGCGCTGATTCAGCTCG--AAGCGGCGAAGC---    613

BSNT_01380___    602 TGCGTGAATGGCA---------AAAAAG----AGA----CAGCAAAA---    631
                      ||||...||.||         ||||||    |||    |.||||||   
BL03900          614 -GCGTCCTTGACATAGACAAGGAAAAAGCTTCAGAGCTCCTGCAAAATGC    662

BSNT_01380___    632 -------------AAG---CGGAT--GAGACAGTAG-GTGTCTGTGAAAC    662
                                  |||   .||||  .|.|.|.||| .||.| ||.|||.
BL03900          663 GATTAACATCTCCAAGGACGGGATCGAAAATATTAGATTGAC-GTTAAAA    711

BSNT_01380___    663 ACTTGCCCGTGAAG-CGCTTGATGATGTCCGCTTATCAGTAC------GC    705
                     |     .|||.||| |||          ||     ||||.||      ||
BL03900          712 A-----GCGTCAAGCCGC----------CC-----TCAGAACAGATGGGC    741

BSNT_01380___    706 ACTCTGCAAACTGA-------AAACGATCCTTCGCTAATCGAAT------    742
                     | ||..||.|.|||       .|.||||            ||||      
BL03900          742 A-TCCACAGATTGAGGCTGTTTATCGAT------------GAATGTTCGG    778

BSNT_01380___    743 CGCTGAAACAGCTGA------CAGAGGACTTTTGCAAAAATGCAGGAGTC    786
                     |||.|.|.||..|||      |     |.|||||||.|||.||       
BL03900          779 CGCAGTACCATATGAATATTTC-----ATTTTTGCATAAAGGC-------    816

BSNT_01380___    787 ACAACAGAATTTG------------CGG--TCAACGG-----TGATCCTG    817
                            .|||||            |.|  ||||.||     |..|..||
BL03900          817 -------GATTTGGATGTTATTTCTCAGATTCAATGGAAGATTATTTTTG    859

BSNT_01380___    818 CAATCATCCCGCTGTCTCTCCATCCGACCCTGATCAGAACGGTGCAGGAA    867
                     .||.||||                  |||                  |||
BL03900          860 AAAACATC------------------ACC------------------GAA    873

BSNT_01380___    868 GCACTGACCAATGCCAAACGGCACGGCG------------GCGCCGCAGC    905
                     ||.|||||.||          |.|||.|            |||.|.||  
BL03900          874 GCGCTGACAAA----------CTCGGTGAAATATGCTGAAGCGACACA--    911

BSNT_01380___    906 TTGTTCGATACAGCT-------TGCCTGCACAACGGACAGCATCAGCCTT    948
                      |||   ||.||.||       ||  ||         |.|.||..||   
BL03900          912 -TGT---ATCCATCTGTATTCATG--TG---------CTGAATACGC---    943

BSNT_01380___    949 GTCATTAAGGATGACGGCAAAGGCAATCCCGA----GGCAGCACTTGGAT    994
                      |||||||.|..||.|..||||.|||  |.||    |||.|||       
BL03900          944 -TCATTAAAGCCGAAGTGAAAGACAA--CGGAAAAGGGCGGCA-------    983

BSNT_01380___    995 TTGGTCTCTTGAATATGAA-AAAGCGGGCAGCGGAAC------ATGGCGG   1037
                               |||.||.|| |||  |||..|.|||.|      ||||.||
BL03900          984 ----------GAAAATCAAGAAA--GGGATGGGGATCATCGGGATGGAGG   1021

BSNT_01380___   1038 AACGATCCGCTT---TGAAAGCGAACGG-GATCAAGGATTTACTGT---A   1080
                     ||||..||||||   |.||.| |||.|| ||||    .||.||.||   |
BL03900         1022 AACGGGCCGCTTCTGTTAACG-GAAAGGTGATC----GTTGACGGTTCAA   1066

BSNT_01380___   1081 AATGCAGAATTTTCACTCGCCAATAAAAAATGGAGCTTCGGGCCCGTGCA   1130
                     |..||    ||.||..||.|||                     ||.|||.
BL03900         1067 ACGGC----TTCTCTGTCACCA---------------------CCCTGCT   1091

BSNT_01380___   1131 GCAAAAGGAGAGTTTATCATGA----   1152
                     ||..|||          |||||    
BL03900         1092 GCCCAAG----------CATGAATGA   1107


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