Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01387 and BL03902

See Amino acid alignment / Visit BSNT_01387 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_01387___yfiM.1.5803.seq
#    -bsequence dna-align/BL03902___yfiM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01387___yfiM-BL03902___yfiM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01387___yfiM-BL03902___yfiM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01387___yfiM
# 2: BL03902___yfiM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1486
# Identity:     644/1486 (43.3%)
# Similarity:   644/1486 (43.3%)
# Gaps:         659/1486 (44.3%)
# Score: 1145.5
# 
#
#=======================================

BSNT_01387___      1 ------------ATGA-----AAAAAAGCATATGGATC-GCAT----GGA     28
                                 ||.|     |||||||.|..||.||| ||.|    |||
BL03902___yfi      1 TTGAATACACTCATCATTGCGAAAAAAGAAATTGTATCTGCTTTTCGGGA     50

BSNT_01387___     29 AAGATGTCAAAATCAGAATCACGGACAGAAAAGGG------TTTATGAT-     71
                            |||          ||||||        |      ||||||.| 
BL03902___yfi     51 -------CAA----------ACGGAC--------GTTCCTTTTTATGCTG     75

BSNT_01387___     72 GCTTATCCTAATGCCGCTGATCCTAACCTGTATTTTAGGCGCGGCGCTCG    121
                     ||.|.|||.|.|| ..|||||  ||   || |||||||||.|.||||   
BL03902___yfi     76 GCATTTCCGATTG-TACTGAT--TA---TG-ATTTTAGGCACTGCGC---    115

BSNT_01387___    122 GATCAGTTGTTGACGGAGGCAGCCGGATT--GATGACATCAA-----AGT    164
                               |||||.|.||       ||  |||  ||.|||     .||
BL03902___yfi    116 ----------TGACGAATGC-------TTTCGAT--CAACAAGCAGCGGT    146

BSNT_01387___    165 CGGCTACATTC-----------AATCAGACCAGTCAGATGCAGCGAACAT    203
                     ||||.|..|||           ||  ||||.|.||.||.|.|||      
BL03902___yfi    147 CGGCGAGGTTCGTGTTTTGTATAA--AGACAATTCTGACGGAGC------    188

BSNT_01387___    204 GTTTACAAAAGGTGTTCTCAAAAAAATGAAGTCGATAAAGGTCACAAAAG    253
                     ||||.|..||||    ||..||||.||    ||| ||||           
BL03902___yfi    189 GTTTTCGCAAGG----CTTTAAAACAT----TCG-TAAA-----------    218

BSNT_01387___    254 CCGGCAGCGAGGACA----------AGATGAAAAAACTGCTT--------    285
                       ||.|||||..|||          |..|.||||||.|| ||        
BL03902___yfi    219 --GGAAGCGAAAACATCCGGCGTTCATTTTAAAAAAGTG-TTGTCCGATA    265

BSNT_01387___    286 --GATGAA----AAGAAAATTGATGTAGGTATCGTCATCCCGAACCATTG    329
                       ||||||    ||||||                |||..|.|       |
BL03902___yfi    266 TGGATGAAAAACAAGAAA----------------TCAAACAG-------G    292

BSNT_01387___    330 GGAAGCCGGCAAAACCTCAGCTGTTGTTTATGCCACTCCTGATCAAACAT    379
                     ||||           ||..|.||               ||.|||     |
BL03902___yfi    293 GGAA-----------CTACGATG---------------CTTATC-----T    311

BSNT_01387___    380 TGAAAAGTTCCATCATCG-AAACAGCTGCAAGCTCTTTTATAGAGCAATA    428
                     |||          .|||| |||||||.||                    |
BL03902___yfi    312 TGA----------GATCGAAAACAGCGGC--------------------A    331

BSNT_01387___    429 TAAAGCGGTAAAGGAAGCCGCGTCAGCCTCAATGGACTACATCAGT----    474
                     |.||||..||                 |..||||||..|.|.||||    
BL03902___yfi    332 TCAAGCTTTA-----------------CCAAATGGATAAAAACAGTATGA    364

BSNT_01387___    475 AAAACAGAAGCTGTAAAGCAAGGAAAACTTGACCCTGCACAGTTTGCAGA    524
                     |||||||.|    |.|..|||||||..| |||||  ||   |||||||.|
BL03902___yfi    365 AAAACAGCA----TTATTCAAGGAATGC-TGACC--GC---GTTTGCAAA    404

BSNT_01387___    525 -------AA------AGCTGG-------CAAAG--GCGCTTGAAAAAGAA    552
                            ||      ||| ||       |||||  ||.|.|||..|||  
BL03902___yfi    405 CCGGTACAATGCCGCAGC-GGAGATCATCAAAGCTGCTCCTGAGCAAG--    451

BSNT_01387___    553 ACAGGTGACAAGCT----GACTATTGCA------GAAAAATCT-------    585
                      |.||.|.|..|||    |||    |||      ||.||.|.|       
BL03902___yfi    452 -CGGGCGCCGTGCTCGGGGAC----GCACCGGGCGACAATTATATCAAGG    496

BSNT_01387___    586 ----GTCG-GCAGC--------AAGGCCGTTACCAGTT---TTCAATACT    619
                         |||| .||||        ||.||     ||||.|   |..|.||.|
BL03902___yfi    497 AGACGTCGCTCAGCTCAGACAGAAAGC-----CCAGCTCCATGGATTATT    541

BSNT_01387___    620 ATTCGGCGGCAAT---------------GCTTTGCATGTTTAT-------    647
                     ||.|||..||.||               |||||.|| ||..||       
BL03902___yfi    542 ATGCGGTTGCCATGACCACTCTGATCGCGCTTTACA-GTGCATTAAGCGC    590

BSNT_01387___    648 --GCTGTTTCATATG-------------------ACAGTCG---GG----    669
                       |||.|||.|||.|                   ||||.||   ||    
BL03902___yfi    591 CAGCTATTTAATAAGGGGGGAGCGGCTTAGAAAAACAGCCGACCGGCTGA    640

BSNT_01387___    670 --GCGAAATCGTTTTTACAGGAAAAGGATACGGAGACGCTTGCCAGAATG    717
                       |||..|.||.||   ||  .|||||    .||||...||||..|.|.|
BL03902___yfi    641 TCGCGGCACCGGTT---CA--TAAAGG----CGAGATCTTTGCGGGTAAG    681

BSNT_01387___    718 CTGATGCCGCCTGCGCAAAAATCCGTCATTCTCTTCGGA-AAATGGCTTG    766
                     |||||  ||     ||||             ||||..|| |||.||.|| 
BL03902___yfi    682 CTGAT--CG-----GCAA-------------TCTTGTGACAAACGGATT-    710

BSNT_01387___    767 GGACGTATCTGTTTGCCATCATACAATTTTTCATATTTCTGATCGTCACA    816
                         ||.|.|.||||||                        .|||||.||
BL03902___yfi    711 ----GTGTATTTTTGCC------------------------GTCGTCGCA    732

BSNT_01387___    817 ATCA------ATGTATTTGGTGTGGACTGGGGCGGTAATCTGCTGTTTGT    860
                     .|||      |.||||||...|.|.||||||                   
BL03902___yfi    733 GTCAGCAAATACGTATTTAAAGCGTACTGGG-------------------    763

BSNT_01387___    861 GAGTGTA-CTCGGGCTTTCTTACGCCGCC--GCTGTATCTGGCAT----T    903
                     |||.|.| ||.||||||  .|| ||.|||  ||||| || .||||    |
BL03902___yfi    764 GAGAGCATCTTGGGCTT--GTA-GCGGCCGTGCTGT-TC-AGCATCGTAT    808

BSNT_01387___    904 TCAATGCTGCTTGCGTCTTTCCTCAGCG------ATATGA----------    937
                     |...|||.|..|||.|| ..||||.|||      ||.|||          
BL03902___yfi    809 TGTTTGCCGTATGCCTC-GGCCTCGGCGTCAGTTATTTGACGAGAACGGG    857

BSNT_01387___    938 --AATCTGCGGATGCGATCGGCGGCTTCGGCATTCA-------ATTGC--    976
                       ||.|.||.|..|||||            ||||.|       |||.|  
BL03902___yfi    858 GGAAGCGGCAGTGGCGAT------------CATTAACGTGTTGATTCCGC    895

BSNT_01387___    977 ---TTGCGGTTCTCGGCGGATCCATGCTGCCGCTGTATCAATTTCC----   1019
                        ||||..||.||||.||           |||| |||   |||||    
BL03902___yfi    896 TAGTTGCATTTTTCGGGGG-----------CGCT-TAT---TTTCCTGTC    930

BSNT_01387___   1020 ---------GGACGTCTTGCAGTCTAT-ATC-CAAAGCGGTGCCAAATCG   1058
                              |.|.||.||..|| ||.| ||| ||.|.|.||..|    ||
BL03902___yfi    931 GACGATGCGGAAGGTGTTTTAG-CTTTGATCACAGACCTGTCTC----CG    975

BSNT_01387___   1059 CTGGGCGCTTG-----ACG--GCTTTCTT--------TCTTTAATGGAAG   1093
                     ||   |||.||     |||  |||.|..|        |.|||        
BL03902___yfi    976 CT---CGCCTGGACGAACGAAGCTATTATGAACATCATATTT--------   1014

BSNT_01387___   1094 GGGGA---------GGCTGGGCTGACCTTCAAAAGCCTGTGCTTCTTTTT   1134
                     |.|||         |||.|||||           |||||    .|.|.||
BL03902___yfi   1015 GCGGACGATTTAGCGGCAGGGCT-----------GCCTG----CCATCTT   1049

BSNT_01387___   1135 GCGG--CGATCGGC-------------TTTTGTTCACTTGCAATTGGTAT   1169
                     ||.|  | ||||||             ||.||.|.| ||||..|||   |
BL03902___yfi   1050 GCTGAAC-ATCGGCTTATCCCTGTTATTTCTGCTGA-TTGCCGTTG---T   1094

BSNT_01387___   1170 CAGACGGCTTCATACAAGATAA--------------   1191
                     |        ||||...|||.||              
BL03902___yfi   1095 C--------TCATTGCAGAGAAGGGAGGGGCTGTAG   1122


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