Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05740 and BL03918

See Amino acid alignment / Visit BSNT_05740 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:50
# Commandline: needle
#    -asequence dna-align/BSNT_05740___ywhC.1.5803.seq
#    -bsequence dna-align/BL03918___ywhC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05740___ywhC-BL03918___ywhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05740___ywhC-BL03918___ywhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05740___ywhC
# 2: BL03918___ywhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 738
# Identity:     456/738 (61.8%)
# Similarity:   456/738 (61.8%)
# Gaps:         126/738 (17.1%)
# Score: 1304.0
# 
#
#=======================================

BSNT_05740___      1 ------------------------------TTGGACCGTTTT-TTATATT     19
                                                   ||.||||||||| |||| ||
BL03918___ywh      1 TTGTATATGAGAAAGAGGGAAAGCCACATTTTAGACCGTTTTCTTAT-TT     49

BSNT_05740___     20 ATCCGTT--ATCTTTAATG---CCATACCTCGTCATCACGCTAATTG-TG     63
                     |||||.|  |     ||||   ||.||..|.||..|.||   |.||| ||
BL03918___ywh     50 ATCCGCTGGA-----AATGATTCCGTATGTTGTTTTGAC---ACTTGCTG     91

BSNT_05740___     64 TCG--TTTACGATGCACGAGCTTGCCCACGCTTATGTCGCATACAAATTC    111
                     .||  ||.||..||||.|||.|.|||||.||.|||||.||.|||||||||
BL03918___ywh     92 CCGCATTCACTGTGCATGAGGTCGCCCATGCGTATGTGGCTTACAAATTC    141

BSNT_05740___    112 GGTGACGATACGGCGAAAAAACAAGGAAGACTGACGCTGAATCCCATTAA    161
                     ||.||.||.|||||.|||...||.||.||.||||||||.||.||..||||
BL03918___ywh    142 GGCGATGAGACGGCCAAACGGCAGGGCAGGCTGACGCTCAACCCGCTTAA    191

BSNT_05740___    162 ACACCTTGATCCGTTCGGAACCATTTTGA---TTCTGGTGGCCGGATTCG    208
                     .||.|||||||||||.|||||.|||||||   ||.|..||   |||||||
BL03918___ywh    192 GCATCTTGATCCGTTTGGAACGATTTTGATCTTTATATTG---GGATTCG    238

BSNT_05740___    209 GGTGGGCGCGCCCCATTCCCGTGAATCGCCGTTTCTTTAAGAAACCC-CG    257
                     |.|||||....||..|.|||||.||.|| |.|||.|||.|.|||||| .|
BL03918___ywh    239 GCTGGGCAAAGCCGGTGCCCGTTAACCG-CTTTTATTTTAAAAACCCGAG    287

BSNT_05740___    258 GCTTGCTGGTGTGCTCGTATCTATAGCCGGGCCCGTCAGTAACCTGATTC    307
                     |||.||.||..|.|||||.||.||.|||||.||..||||.||.|||||.|
BL03918___ywh    288 GCTGGCCGGATTTCTCGTGTCAATCGCCGGACCGATCAGCAATCTGATCC    337

BSNT_05740___    308 TTGCGTTTATTGGTTT-------CT--TTTTGTTAGTGTTGATGCATGC-    347
                     ||||.||.||.|||||       ||  ||||||..|||       |.|| 
BL03918___ywh    338 TTGCTTTCATCGGTTTTATATTGCTGCTTTTGTCCGTG-------AAGCT    380

BSNT_05740___    348 GTACGGAATGGAAATGCTTGCGGCGTT----CAGCACGGGGCTGGATCAG    393
                     ||.|||.|.|   .|||.|||.| |||    ||||   ||..||..|||.
BL03918___ywh    381 GTCCGGGACG---CTGCCTGCCG-GTTTTTACAGC---GGTTTGCTTCAA    423

BSNT_05740___    394 TTTTTTTCTATTTGGATACAGCTGAATCTTGTCTTGTTTTTATTTAATCT    443
                     ||||||.|.||||||.|..|.||.||.||..|.||.|||.|.||||||.|
BL03918___ywh    424 TTTTTTACGATTTGGGTGAATCTCAACCTGCTTTTATTTCTGTTTAATTT    473

BSNT_05740___    444 GCTGCCGCTTCCTCCGCTCGATGGCTATCGAATTATAGAAGATCTCGTTC    493
                     ..|||||.|.||.||.||.||.||.|.|||..|||||.|.|||.|.||  
BL03918___ywh    474 AATGCCGTTCCCGCCTCTTGACGGTTTTCGGGTTATACAGGATGTGGT--    521

BSNT_05740___    494 CGCC------GGGCGTGCG----TGCCAAAATGACGCAGGCGGAGAGCTA    533
                     ||||      |.|||.|||    ||.|.|||| |.| |||||      ||
BL03918___ywh    522 CGCCCCCGAAGTGCGGGCGAAGCTGTCGAAAT-ATG-AGGCG------TA    563

BSNT_05740___    534 CGGCTTTATCGTATTTTTGGTGCTGTTTGTGACACCGCTAGGATCTTACG    583
                     |||||..|||||.|||.||.|..|..|..|.||||||||.||....||.|
BL03918___ywh    564 CGGCTCGATCGTCTTTCTGATTATCGTCATTACACCGCTTGGCCAATATG    613

BSNT_05740___    584 TGCTGTGGCCGATGCTCAAT-----GCAGGAAGAGAT----TCGAT-TTT    623
                     |..|.||||||.|..|.|||     ||.||||..|||    ||||| |||
BL03918___ywh    614 TATTCTGGCCGTTTTTGAATGACGGGCGGGAATTGATCATATCGATATTT    663

BSNT_05740___    624 AA-AGCTGTTTTCAGCGATATTTCAACCGCTTTTGTAG    660
                     || ||| ||||||          |..|||||..|||||
BL03918___ywh    664 AACAGC-GTTTTC----------CGGCCGCTGATGTAG    690


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