Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05898 and BL03930

See Amino acid alignment / Visit BSNT_05898 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05898___ywaA.1.5803.seq
#    -bsequence dna-align/BL03930___ywaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05898___ywaA-BL03930___ywaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05898___ywaA-BL03930___ywaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05898___ywaA
# 2: BL03930___ywaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1126
# Identity:     832/1126 (73.9%)
# Similarity:   832/1126 (73.9%)
# Gaps:          68/1126 ( 6.0%)
# Score: 3029.5
# 
#
#=======================================

BSNT_05898___      1 ATGACTAAACAAACGATTCGCGTTGAATTGACA--TCA--ACA--AAAAA     44
                     |||||.|||||||||||..||||       |||  |||  |||  |||||
BL03930___ywa      1 ATGACAAAACAAACGATCAGCGT-------ACAGCTCAGTACAGCAAAAA     43

BSNT_05898___     45 ACCGAAA-CCAGACCCAAATCAGCT----TTCGTTCGGAAGAGTGTTTAC     89
                     |.|.||| |||||..|..|..||||    ||||..||||    ..|||||
BL03930___ywa     44 AGCAAAAGCCAGAGGCTGACAAGCTCGAATTCGGCCGGA----CCTTTAC     89

BSNT_05898___     90 AGACCACATGTTTGTAATGGACTATGCGGCAGATAAAGGTTGGTACGATC    139
                     .||||||||||||.|.|||||||||.||||.||.||.||.|||.||||||
BL03930___ywa     90 CGACCACATGTTTATCATGGACTATACGGCTGAAAACGGCTGGCACGATC    139

BSNT_05898___    140 CAAGAATCATTCCTTATCAGCCCTTATCAATGGATCCGGCCGCAATGGTC    189
                     |.||||||.|||||||.|||||..|...||||||.|||||.||||||||.
BL03930___ywa    140 CGAGAATCGTTCCTTACCAGCCGATTGAAATGGACCCGGCTGCAATGGTT    189

BSNT_05898___    190 TATCACTACGGCCAAACCGTGTTTGAAGGGTTAAAGGCTTACGTGTCAGA    239
                     ||.||||||||.|||.||||.||||||||.|||||.|||||..|.||| |
BL03930___ywa    190 TACCACTACGGACAATCCGTTTTTGAAGGATTAAAAGCTTATTTATCA-A    238

BSNT_05898___    240 G-GATGACCATGTTCTGCTTTTCAGACCGGAAAAAAATATGGAACGCCTG    288
                     | ||.|.|...|||||.||.||||||||.||||||||..|.||..|.||.
BL03930___ywa    239 GCGAAGGCAGAGTTCTTCTGTTCAGACCTGAAAAAAACTTCGAGAGACTC    288

BSNT_05898___    289 AATCAATCAAACGACCGCCTCTGCATCCCGCAAATTGATGAAGAACAGGT    338
                     |||.||||.|||||||||||||||||.||.|...|||||...|||...||
BL03930___ywa    289 AATAAATCCAACGACCGCCTCTGCATTCCCCGGGTTGATCCTGAAATCGT    338

BSNT_05898___    339 TCTTGAAGGCTTAAAGCAGCTTGTCGCA-ATTGATAAAGACTGGATTCCA    387
                     |||.|||||..|.||||||||.|| .|| ||.||.||.||.||||||||.
BL03930___ywa    339 TCTGGAAGGGCTGAAGCAGCTGGT-TCAGATCGACAAGGAATGGATTCCT    387

BSNT_05898___    388 AATGCGGAGGGCACGTCCCTTTACATCCGTCCGTTCATCATCGCAACCGA    437
                     .|.||.|||||.||.||||||||.||||||||||||||.||..||||.||
BL03930___ywa    388 CAAGCTGAGGGGACATCCCTTTATATCCGTCCGTTCATTATTTCAACAGA    437

BSNT_05898___    438 GCCTTTCCTTGGTGTTGCGGCATCTCATACGTATAAGCTCTTGATCATTC    487
                     .||.|.||||||.||.||..||||..|||.||||||..|..||||||||.
BL03930___ywa    438 ACCGTACCTTGGCGTCGCCCCATCCAATATGTATAAAATGCTGATCATTT    487

BSNT_05898___    488 TTTCTCCGGTCGGCTCTTATTACAAAGAAGGCATTAAGCCG----GTCAA    533
                     |.||.||||||||.||||||||||||||||||||    |||    ||.||
BL03930___ywa    488 TATCGCCGGTCGGATCTTATTACAAAGAAGGCAT----CCGCCCTGTGAA    533

BSNT_05898___    534 AATCGCTGTTGAAAGTGAATTTGTCCGTGCGGTAAAAGGCGGAACAGGAA    583
                     |||.|||||||||||.||||||||||||||.||...||||||.|||||.|
BL03930___ywa    534 AATTGCTGTTGAAAGCGAATTTGTCCGTGCTGTGGCAGGCGGTACAGGCA    583

BSNT_05898___    584 ATGCCAAAACCGCAGGAAACTATGCTTCAAGCTTAAAAGCGCAGCAGGTC    633
                     ||||.|||||.||.||||||||.|||.|.|||.|.||.||.|||.|.||.
BL03930___ywa    584 ATGCAAAAACGGCCGGAAACTACGCTGCGAGCCTGAAGGCTCAGGAAGTT    633

BSNT_05898___    634 GCCGAAGAG-AAAGGATTTTCCCAAGTGCTCTGGCTGGACGGCATTGAGA    682
                     ||.||| || |||||.||.||.||||||||.|||||.|||||..||||.|
BL03930___ywa    634 GCGGAA-AGCAAAGGCTTCTCACAAGTGCTGTGGCTTGACGGAGTTGAAA    682

BSNT_05898___    683 AGAAATACATCGAAGAAGTCGGAAGCATGAACATCTTCTTCAAAATCAAC    732
                     ||||||||||.||||||||.||.|||||||||||||||||||||||||.|
BL03930___ywa    683 AGAAATACATTGAAGAAGTAGGCAGCATGAACATCTTCTTCAAAATCAGC    732

BSNT_05898___    733 GGTGAAATCGTAACACCGATGCTGAACGGGAGCATCCTGGAAGGCATTAC    782
                     ||||||||.||.||.|||...||.|||||.|||||..|||||||||||||
BL03930___ywa    733 GGTGAAATTGTCACTCCGGCTCTAAACGGAAGCATTTTGGAAGGCATTAC    782

BSNT_05898___    783 GCGCAATTCAGTCATCGCCTTGCTT-AAGCATTGGGGCCT-TCAAGTTTC    830
                     |.|.||.||.|||||| |.|..||| ||.||.|||||.|| || .||..|
BL03930___ywa    783 GAGAAACTCCGTCATC-CATCTCTTAAAACAATGGGGACTCTC-CGTAAC    830

BSNT_05898___    831 AGAACGAAAAATTGCGATCGATGAGGTCATCCAAGCCCATAAAGACGGCA    880
                     .|||.||||||||.|..|.|||||..|..|.||.||.||.|||||||||.
BL03930___ywa    831 CGAAAGAAAAATTTCAGTTGATGAACTGGTTCAGGCTCACAAAGACGGCC    880

BSNT_05898___    881 TCCTGGAAGAAGCCTTCGGAACAGGTACAGCAGCTGTTATTTCCCCAGTC    930
                     |.||.||.|||||.|||||.||.||.||.||.|||||.||||||||.|||
BL03930___ywa    881 TGCTTGAGGAAGCATTCGGCACCGGAACCGCCGCTGTCATTTCCCCCGTC    930

BSNT_05898___    931 GGCGAGCTGATCTGGCAGGATGAAACACTTTCGATCAACAACGGTGAAAC    980
                     |||||||||||||||.|.||.||||..|||..|||||||||||||.||||
BL03930___ywa    931 GGCGAGCTGATCTGGAAAGACGAAAGCCTTGTGATCAACAACGGTCAAAC    980

BSNT_05898___    981 AGGAGAAATCGCAAAAAAACTATATGACACGATTACAGGCATTCAAAAAG   1030
                     .|||||||||||.||||..||.||..|.|||||.||.||.||||||||||
BL03930___ywa    981 TGGAGAAATCGCCAAAAGGCTCTACCAAACGATCACCGGTATTCAAAAAG   1030

BSNT_05898___   1031 GCGCTGTCGCAGACGAATTCGGATGGACGACCGAAGTCGCAGCGCTGACT   1080
                     |||||.|..|.|||..||||||.|||||....|||||            |
BL03930___ywa   1031 GCGCTTTGCCTGACACATTCGGCTGGACAGTTGAAGT------------T   1068

BSNT_05898___   1081 GAAAGCAAGTAA--------------   1092
                     ||.|  ||||||              
BL03930___ywa   1069 GATA--AAGTAAGCCAGTCCTGCTAA   1092


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