Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05891 and BL03934

See Amino acid alignment / Visit BSNT_05891 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05891___dltA.1.5803.seq
#    -bsequence dna-align/BL03934___dltA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05891___dltA-BL03934___dltA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05891___dltA-BL03934___dltA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05891___dltA
# 2: BL03934___dltA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1622
# Identity:    1057/1622 (65.2%)
# Similarity:  1057/1622 (65.2%)
# Gaps:         223/1622 (13.7%)
# Score: 3150.0
# 
#
#=======================================

BSNT_05891___      1 ATGAAACT--TTTACATGCTATTCAAACACATGCGGAAACTTATCCGCAA     48
                     ||||||||  ||.|.|  |.|||.|||.|.|.|||.|||      |.|||
BL03934___dlt      1 ATGAAACTGATTGAAA--CAATTAAAAAATACGCGCAAA------CACAA     42

BSNT_05891___     49 ACCGAT-GCCTTCCGCT-------CTCAAGGCCAGTCGCTCACGTATCAG     90
                     .||||| .||||  |||       .|.|||...|...|||.||.|| |.|
BL03934___dlt     43 CCCGATACCCTT--GCTTTTGTGAATGAAGAAGAAAAGCTGACATA-CGG     89

BSNT_05891___     91 -GAATTATGGGAGCAGTCTGACCGCGCGGC-TGCCGC---GATCCAAA--    133
                      ||..|.|||...||.|||||    |||.| ||||||   |||.||||  
BL03934___dlt     90 AGAGCTTTGGTCACAATCTGA----GCGCCTTGCCGCAAGGATTCAAAGC    135

BSNT_05891___    134 -AACGCATTTCTGGGGAAAAGA--AATCTCCTATCCTTGTGTACGGCCAC    180
                      || ||.||       ||.|||  ..|||||.|||.||||.|||||.||.
BL03934___dlt    136 GAA-GCTTT-------AACAGATGCTTCTCCGATCATTGTCTACGGACAT    177

BSNT_05891___    181 ATGGAGCCGCACATGATCGTTTCCTTCTTGGGAAGTGTCAAAGCGGGACA    230
                     |||.|.|||...|||...|||||||||.|||...||||.|||||.||.||
BL03934___dlt    178 ATGAAACCGGTTATGGCGGTTTCCTTCCTGGCTTGTGTAAAAGCCGGGCA    227

BSNT_05891___    231 TCCTTATATTCCGGTTGACCTGTCTATTCCGTCCGAACGGATTGCGAAAA    280
                     |||.||.|||||.||||||.|.||.||||||.|.||.||||||..|||||
BL03934___dlt    228 TCCGTACATTCCAGTTGACGTATCGATTCCGGCAGACCGGATTCTGAAAA    277

BSNT_05891___    281 TTATCGAAAGCTCTGGAGCAGAATTGCTGATCCATGCAGCAGG-ACTCTC    329
                     |.|||.|.||.||...|||.||..|.|||.||.||....|||| ||| ||
BL03934___dlt    278 TCATCAACAGTTCAAAAGCCGAGCTTCTGCTCAATAATTCAGGCACT-TC    326

BSNT_05891___    330 AATTGATGCAGTCAGCCAGCAGAT----TCAGACAGTTTCTGCGGAAGAA    375
                     ..||||      ||  |.|.||||    |||     ||||.|..|..|||
BL03934___dlt    327 GGTTGA------CA--CGGGAGATGCCCTCA-----TTTCCGTAGTGGAA    363

BSNT_05891___    376 C------TGCTGGAA-----------AACGAAGGCAGCTCTGTCATCCAA    408
                     |      |.||.|||           ..||.||.|||       ||||..
BL03934___dlt    364 CCGGGCGTTCTTGAAGGAGACGGGGTGCCGGAGACAG-------ATCCCG    406

BSNT_05891___    409 GATCAATGGGT---TAAGGAACACGAGACGTTTTATATCATTTACACTTC    455
                     || |..|||||   |..||||   ||.||.|||||.||.||.|||||.||
BL03934___dlt    407 GA-CGCTGGGTACATGGGGAA---GATACTTTTTACATTATCTACACATC    452

BSNT_05891___    456 CGGGAGCACAGGAAATCCGAAAGGCGTGCAGATTTCCGCTGCGAATCTTC    505
                     |||.|||||.||||||||.|||||||||||.||.||.||.|..||.||||
BL03934___dlt    453 CGGAAGCACGGGAAATCCAAAAGGCGTGCAAATCTCAGCCGATAACCTTC    502

BSNT_05891___    506 AAAGCTTCACAGACTGGATTTGTGCA-----GACTTTCCAGTCAGCGGA-    549
                     |.|||||||||||.|||||     ||     ||||||||.||    ||| 
BL03934___dlt    503 AGAGCTTCACAGATTGGAT-----CACGAATGACTTTCCGGT----GGAA    543

BSNT_05891___    550 ---GGAAAAATATTTTTAAACCAAGCACCGTTCTCATTTGATTTGTCTGT    596
                        ||..||.|.||.|||||.|||||.|||||.||.||||||||.||.||
BL03934___dlt    544 AGCGGCCAAGTGTTCTTAAATCAAGCCCCGTTTTCCTTTGATTTATCGGT    593

BSNT_05891___    597 CATGGACCTATATCCGTGCCTTCAATCAGGCGGGACTTTACATTG---CG    643
                     .||||||||.|||||||||||.||.||.||.||.||.|||   ||   .|
BL03934___dlt    594 AATGGACCTTTATCCGTGCCTGCAGTCCGGAGGCACCTTA---TGGACGG    640

BSNT_05891___    644 TGACAAAGGATGCTGTGAACAA---GCCGAAAGTCTTATTTGAAGAGCTG    690
                     |.||.||.||   ..|||..||   |||||||.|.||.|||||||..|||
BL03934___dlt    641 TTACGAAAGA---CATGATTAATCGGCCGAAACTATTGTTTGAAGCACTG    687

BSNT_05891___    691 AAGAAGTCCGGGCTGAATGTGTGGACATCAACACCTTCCTTTGTGCAAAT    740
                     ||..|||||....|.||.||.||||||||.||.|||||.||.|..|||||
BL03934___dlt    688 AAACAGTCCAACGTCAACGTCTGGACATCGACGCCTTCATTCGCACAAAT    737

BSNT_05891___    741 GTGCCTGATGGATCCGGGTTTTTCACAGGATCTGCTGCCTCATGCGGA-C    789
                     ||||.|||||||||||..||.|||..|.||.|||||.||..| ||.|| |
BL03934___dlt    738 GTGCTTGATGGATCCGTCTTATTCGGAAGAGCTGCTTCCGGA-GCTGAGC    786

BSNT_05891___    790 ACATTTATGTTTTGCGGAGAGGTTCTTCCGGTTTCTGTGGCAAAAGCGCT    839
                     ...||||||||.||||||||....|||||.|..||.||.||.|.|   |.
BL03934___dlt    787 TTGTTTATGTTCTGCGGAGAAACGCTTCCTGCGTCAGTCGCCAGA---CA    833

BSNT_05891___    840 GCTT---GAGCGTTTTCCGAAAGC----GAAGATTTTTAATACGTACGGC    882
                     ||||   ||..|.|||||.||.||    |    |||||||.||.||||||
BL03934___dlt    834 GCTTAAAGAAAGATTTCCAAAGGCTCGTG----TTTTTAACACATACGGC    879

BSNT_05891___    883 CCGACTGAAGCGACAGTGGCTGTCACATCGGTTGAAATTACGGATGACGT    932
                     |||||.||||||||.||.||.|||||.||..|.|||.|.||.||.|||||
BL03934___dlt    880 CCGACCGAAGCGACCGTTGCCGTCACTTCCATCGAAGTAACAGACGACGT    929

BSNT_05891___    933 CATCAGCCACAGCGAA----TCGCTTCCAGTGGGCTTC------GCC--A    970
                     ..|.|.|.|    |.|    ||.|||||.||.|| |||      |||  |
BL03934___dlt    930 ATTAAACAA----GTATTCTTCTCTTCCCGTCGG-TTCTGAAAAGCCCGA    974

BSNT_05891___    971 AACCAGATATGAACATTTTCATTATGGATGAAGA-GGGACAGCCGCTTCC   1019
                     ||||      ||| ||..|.||.||..||||||| ||.|.|||||  |||
BL03934___dlt    975 AACC------GAA-ATCGTAATCATCAATGAAGACGGAAAAGCCG--TCC   1015

BSNT_05891___   1020 -TGATGGAGAAAAAGGAGAAATCGTCATTGCAGGGCCGAGTGTAAGCCGA   1068
                      .||.||.||||||||.||.|||.|.|||.|.||..|.||.||.|||..|
BL03934___dlt   1016 AAGACGGGGAAAAAGGCGAGATCATAATTACCGGAGCAAGCGTCAGCAAA   1065

BSNT_05891___   1069 GGCTACCTTGGTGAGCCAGAGCTGACGGAAAAAGCGTTTTTCTCTCATGA   1118
                     |||||..|.||.||...||.|||||||||||||||||||||||||.|..|
BL03934___dlt   1066 GGCTATTTAGGCGAAAAAGCGCTGACGGAAAAAGCGTTTTTCTCTTACAA   1115

BSNT_05891___   1119 AGG--CCAGTGGGCATACCGAACTGGCGATGCCGGCTTTATTC----AAG   1162
                     .||  ||..|  ||.|||||.||.||.||.||.||  |||  |    ||.
BL03934___dlt   1116 CGGCTCCCCT--GCTTACCGCACCGGTGACGCAGG--TTA--CAAAGAAA   1159

BSNT_05891___   1163 ACGGTCAGATTTTCTGCCAAGGACGTTTGGATTTCCAAATTAAACTTCAC   1212
                     ||||.|||.|.||||.||..|||.|..|.|||||||||||.|||||.|||
BL03934___dlt   1160 ACGGCCAGCTCTTCTTCCTCGGAAGACTCGATTTCCAAATCAAACTGCAC   1209

BSNT_05891___   1213 GGCTATCGAATGGAGCTGGAGGAAATCGAGTTCCATGTCAGA-----CAG   1257
                     |||||.||.||.|||||.||.||||||||     ||.|||||     |||
BL03934___dlt   1210 GGCTACCGGATTGAGCTTGAAGAAATCGA-----ATATCAGATCAATCAG   1254

BSNT_05891___   1258 TCACAGTACGTTCGCTCTGCTGTCGTGATTCC-TTAT-CAGCCAAACGGA   1305
                     ||.|..||.||.|..||.||.|||||.||||| ||.| |.||.|   |||
BL03934___dlt   1255 TCCCGATATGTGCAGTCGGCAGTCGTTATTCCATTCTACCGCGA---GGA   1301

BSNT_05891___   1306 -ACAGTTGAGTACCTGATCGC--TGCTATTGTGCCTGAGGAGCATGAGTT   1352
                      |.|.|.|||||.||||||||  ||  ||||||||||..||.||.||.||
BL03934___dlt   1302 GAAAATCGAGTATCTGATCGCCATG--ATTGTGCCTGCCGAACACGATTT   1349

BSNT_05891___   1353 CGAGAAGGAATTCCAGCTGACAAGCGCTATTAAAAAAGAGCTT---GCCG   1399
                     |||.|||||||.||||.|.||.|||||.|||||.|||||  ||   ||.|
BL03934___dlt   1350 CGAAAAGGAATACCAGTTAACCAGCGCGATTAAGAAAGA--TTTGGGCAG   1397

BSNT_05891___   1400 CTTCTCTTCCGGCATATATGATCCCGAGAAAATTTATCTATCAGGATCAC   1449
                     | ...||.|||||.||||||||.|||||||||||.||.|||||..|..|.
BL03934___dlt   1398 C-AAGCTGCCGGCCTATATGATTCCGAGAAAATTCATGTATCAAAAAGAG   1446

BSNT_05891___   1450 ATTCAAATGACGGCTAACGGCAAAATTGACCG---------AAAACGCAT   1490
                     ||||..|||||.||.|||||.|||||.|||||         ||||     
BL03934___dlt   1447 ATTCCGATGACAGCAAACGGTAAAATCGACCGCAAGAGATTAAAA-----   1491

BSNT_05891___   1491 TGGCGAAGAGGTTCTTGTATGA   1512
                         ||||||||....||||||
BL03934___dlt   1492 ----GAAGAGGTAACCGTATGA   1509


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