Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05815 and BL03951

See Amino acid alignment / Visit BSNT_05815 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05815___thiD.1.5803.seq
#    -bsequence dna-align/BL03951___thiD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05815___thiD-BL03951___thiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05815___thiD-BL03951___thiD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05815___thiD
# 2: BL03951___thiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     602/827 (72.8%)
# Similarity:   602/827 (72.8%)
# Gaps:          25/827 ( 3.0%)
# Score: 2083.5
# 
#
#=======================================

BSNT_05815___      1 ATGTCTATGAATAAAGCACTCACCATTGCCGGCTCAGATTCCAGCGGCGG     50
                     |||.|.|||.|.||||||||.||.||.||||||||.||.||.|||||.||
BL03951___thi      1 ATGACAATGCACAAAGCACTGACAATCGCCGGCTCTGACTCAAGCGGAGG     50

BSNT_05815___     51 TGCTGGGATTCAAGCTGATTTAAAAACATTTCAAGAAAAAAACGTATACG    100
                     .||.||.|||||.||.||.||||||||.||.||.|||||.|||||.||.|
BL03951___thi     51 CGCCGGCATTCAGGCGGACTTAAAAACGTTCCAGGAAAAGAACGTCTATG    100

BSNT_05815___    101 GGATGACCGCCTTAACGGTGATCGTTGCGATGGACCCAAACAACAGCTGG    150
                     |.|||||.|||.|.|||||..|.||.||.||||||||..|.||||..|||
BL03951___thi    101 GAATGACGGCCCTTACGGTTGTTGTCGCCATGGACCCTGAGAACAATTGG    150

BSNT_05815___    151 GACCATCAGGTATTCCCGATCGATACTGATACAATCCGCGCCCAGCTTGC    200
                     .|.||||||||.|||||..|.|||||.||....||||||||.|||||..|
BL03951___thi    151 AATCATCAGGTGTTCCCAGTTGATACGGAAGTCATCCGCGCTCAGCTGTC    200

BSNT_05815___    201 AACAATTACGGACGGCATCGGCGTGGACGCCATGAAAACAGGAATGCTGC    250
                     .||.|||..||||||||||||.||.||.||.||||||||.||.|||||.|
BL03951___thi    201 GACGATTGTGGACGGCATCGGTGTAGATGCGATGAAAACGGGCATGCTTC    250

BSNT_05815___    251 CAACCGTTGACATTATCGAGCTTGCGGCAAAAACGATCA--AAGAAAAAC    298
                     |.||.||||||||.||.||..|.||||||.|.||.||.|  |||.|.|.|
BL03951___thi    251 CGACAGTTGACATAATTGAATTGGCGGCAGACACAATTAAGAAGCACAGC    300

BSNT_05815___    299 AATTAAAAAATGTGGTAATTGACCCTGTTATGGTTTGCAAAGGTGCTAAT    348
                     |  |.||||||||.||.|||||.||.||||||||.||||||||.||.|||
BL03951___thi    301 A--TGAAAAATGTCGTCATTGATCCGGTTATGGTATGCAAAGGGGCAAAT    348

BSNT_05815___    349 GAAGTCCTTTATCCGGAGCACGCCCAAGCCCTGCGTGAGCAATTGGCTCC    398
                     |||||.||.|||||.||||||||..|.||..|..|.||||..||||||||
BL03951___thi    349 GAAGTGCTGTATCCCGAGCACGCAAAGGCTTTAAGAGAGCTTTTGGCTCC    398

BSNT_05815___    399 GCTAGCCACTGTCATTACGCCAAA-CTTGTTTGAAGCCAGCCAGCTCAG-    446
                     |||.|||||.|||||||||||||| ||| |||||||||.|||||||||| 
BL03951___thi    399 GCTTGCCACGGTCATTACGCCAAATCTT-TTTGAAGCCGGCCAGCTCAGC    447

BSNT_05815___    447 CGGCATGGATGAACTAAAAACAGTTGACGATATGATCGAAGCCGCGAAAA    496
                     ||.|.|||| |||.|.|||||.|||||..|.||||..|||||.||    |
BL03951___thi    448 CGCCTTGGA-GAAATTAAAACGGTTGAGCAAATGAAGGAAGCGGC----A    492

BSNT_05815___    497 AA----ATTCACGCACTCGGCGCTCAATATGTCGTCATTACAGGCGGAGG    542
                     ||    ||.||||..||||||||.|||.|.|||.||||||||||.|||||
BL03951___thi    493 AAGGCCATCCACGGCCTCGGCGCCCAACACGTCCTCATTACAGGGGGAGG    542

BSNT_05815___    543 CAAACTCAAACATGAGAAAGCCGTTGATGTTCTCTATGACG---GAGAAA    589
                     ||||||.||.||.||.|||||.||.|||||..|.|.|||||   |.||  
BL03951___thi    543 CAAACTAAATCACGAAAAAGCGGTAGATGTATTATTTGACGGCCGGGA--    590

BSNT_05815___    590 CAGCGGAAGTCCTTGAAAGCGAAATGATCGATACGCCTTATACACATGGC    639
                      .||.||.||..|.|||.|.||||..|||||.||.||.||.||.||.||.
BL03951___thi    591 -TGCAGAGGTGATCGAAGGAGAAAGAATCGACACCCCATACACGCACGGG    639

BSNT_05815___    640 GCAGGCTGTACGTTCTCAGCAGCCGTGACAGCGGAGCTTGCCAAAGGTGC    689
                     ||.|||||.||.|.|||.||.||..|.||.||.|||||||||||||||.|
BL03951___thi    640 GCGGGCTGCACCTACTCCGCGGCAATTACGGCTGAGCTTGCCAAAGGTTC    689

BSNT_05815___    690 GGAAGTCAAAGAAGCCATTTACGCAGCGAAAGAATTCATCACAGCGGCCA    739
                     ..|.||.||||||||||||||..|.||.||||..||.||.||.|..||.|
BL03951___thi    690 AAATGTAAAAGAAGCCATTTATTCTGCAAAAGCGTTTATTACGGAAGCGA    739

BSNT_05815___    740 TTAAAGAATCCTTCCCGCTAAACCAGTATGTTGGTCCTACGAAGCATTCT    789
                     ||...|||||.||||...|.||.||.||.||.||.||.||.|||||.||.
BL03951___thi    740 TTCGCGAATCGTTCCGTTTGAATCAATACGTCGGGCCGACAAAGCACTCC    789

BSNT_05815___    790 GCACTGCGCCTGAATCAACAATCATAA    816
                     ||..|.||.|| .|.|..|||  ||||
BL03951___thi    790 GCTTTACGACT-CAGCGGCAA--ATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05815 and BL03951

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
