Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01791 and BL03981
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01791___yhjK.1.5803.seq
# -bsequence dna-align/BL03981___ntdB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01791___yhjK-BL03981___ntdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01791___yhjK-BL03981___ntdB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01791___yhjK
# 2: BL03981___ntdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 970
# Identity: 540/970 (55.7%)
# Similarity: 540/970 (55.7%)
# Gaps: 242/970 (24.9%)
# Score: 1301.0
#
#
#=======================================
BSNT_01791___ 1 ATGT--TATTAAGCAAGAAA-----TCGGAGTATAAAACGTTATC-CACG 42
|||| ||| ||.|||| || ||.|| |||
BL03981___ntd 1 ATGTCGTAT----CATGAAACACTTTC-------------TTTTCACAC- 32
BSNT_01791___ 43 GTTG---------AAC-ATCCTCAGTATATTGTTTTTTGTGATTTTGATG 82
.||| ||| |.||..||||....||.|||||.||||||||||
BL03981___ntd 33 CTTGCAGCAAGTAAACAAGCCGAAGTACGCCGTATTTTGCGATTTTGATG 82
BSNT_01791___ 83 AAACGTATTTTCCGCATACA-----ATCGACGA----ACAAAAGC----- 118
|.||.||||| |||..||| |.|||.|| |.||||||
BL03981___ntd 83 AGACATATTT--CGCCCACAGCATCACCGATGAATCGAGAAAAGCGCTCA 130
BSNT_01791___ 119 ---------AACAAGACATTTATGAACTCGAAGACTACCTAGAACAAAAA 159
|| ||||||||..|.||| .||.|.||.||.||.||.
BL03981___ntd 131 TGGACCTTGAA----ACATTTATTCATTCG--CACCATCTTGATCACAAG 174
BSNT_01791___ 160 AGTAAAGATGGGGAACTAATAATCGGATGGGTTACTGGGAGCAGTATAGA 209
| |..|..||||.|||||.||.||||||||..|...
BL03981___ntd 175 A---------------TTTTGCTCGGCTGGGTGACCGGGAGCAGCCTGTC 209
BSNT_01791___ 210 ATCTATTATCGATAAAATGGGACGAGGAAAATTTAGATATTTTCCGCATT 259
|||..||.|.|..||||||...||.|||...|||.|||||.|||||||||
BL03981___ntd 210 ATCCGTTCTTGCAAAAATGAAGCGGGGAGGCTTTCGATATCTTCCGCATT 259
BSNT_01791___ 260 TTATAGCTAGTGATCTTGGAACTGAAATTACGTACTTTTCAGAGCATAAC 309
||.|.||..||||.|||||.||||||||.||.||.||.||.|| |.||
BL03981___ntd 260 TTGTCGCCGGTGACCTTGGCACTGAAATCACTTATTTCTCTGA--AGAA- 306
BSNT_01791___ 310 TTCGGTCAGCAA------GATAACAAGTGGAACAG-----TCGCATAAAT 348
|| .||| |||||..|.|||.| || |.|||..|||
BL03981___ntd 307 ---GG---CCAAGTCTCTGATAAAGATTGGGA-AGCCCGATTGCAAGAAT 349
BSNT_01791___ 349 GAAGGGTTTAGT--AAAGAAAAGGTTGAA-AAACTTGTGAAACAG---CT 392
.|| .||..| .|.||...|||.||| ||| |.||.||| ||
BL03981___ntd 350 CAA---ATTTCTCCCATGATCTGGTCGAAGAAA----TCAAGCAGACTCT 392
BSNT_01791___ 393 GCATGAAAATCATAACATT---CTTTTGAATCCTCAAACTCA--ATTAGG 437
...|.||||..||.|.||| |||.|| |||||.||||| || ||
BL03981___ntd 393 CTCTAAAAAATATGAGATTGCGCTTGTG---CCTCAGACTCAGCAT--GG 437
BSNT_01791___ 438 AAAGTCACGGTATAAGCAT-AACTTCTACTATCA------GGAACAAGAT 480
....||.||.||||| .|| ||||..||||||.| ||||.|
BL03981___ntd 438 CTTTTCCCGCTATAA-AATCAACTATTACTATAAATCGTTGGAAGA---- 482
BSNT_01791___ 481 GA-AATAAACGACAAGAAAAACCTATTAGCAATTGAAAAAATC------- 522
|| .||| ||.|||| ..||..|||||...|||
BL03981___ntd 483 GAGCATA---GATAAGA---------GGGCGCTTGAAGCCATCAGGCGGC 520
BSNT_01791___ 523 -TGCGA--------GGAATATGGCGTTTCAGTAAATATAAATCGGTGTAA 563
|||.| ||||||.| |||||||||.|||||.||.||
BL03981___ntd 521 TTGCAAGAGAGCATGGAATAGG-------AGTAAATATCAATCGCTGCAA 563
BSNT_01791___ 564 TCCCTTAGCAGGCGATCCAGAAGACAGCTATGATGTAGATTTTATCCCCA 613
.||.||.|||||||||||.|||.|||||||||||||.||.|||||||||.
BL03981___ntd 564 CCCTTTGGCAGGCGATCCGGAAAACAGCTATGATGTGGACTTTATCCCCT 613
BSNT_01791___ 614 TAGGGACAGGAAAGAATG-AAATTGTAACGTTTATGTTAGAGAAATACAA 662
|..|||||||.|| |..| |.|||||....|||||.||.||
BL03981___ntd 614 TGCGGACAGGCAA-ACCGTACATTGTGGATTTTATATTGGA--------- 653
BSNT_01791___ 663 CCTAAATAC-CGAAAGAG----------CTATCGCATTTGGGGATAGTGG 701
|||||.| |||.|||| |..|.||.||.||.||.||.||
BL03981___ntd 654 --TAAATTCGCGATAGAGAGGGAGAATTCATTTGCTTTCGGCGACAGCGG 701
BSNT_01791___ 702 AAATGATGTTCGTATGTTACAGACAGTAGGGAATGGATATCTGCTAAAAA 751
|||.|||||...||||.||.|.|.|...||..||||.||||||.|....|
BL03981___ntd 702 AAACGATGTGGATATGCTAAAAAAAACCGGACATGGTTATCTGGTGGGGA 751
BSNT_01791___ 752 ATGCAACA-CAGGAAGCCAAAAACTTGCACAA---CCATATAACTGATAG 797
||||.||| || |||||| ||.|.||.|.| ||.|||.||.|| ||
BL03981___ntd 752 ATGCGACAGCA-GAAGCC---AAGTCGCTCCATTCCCGTATGACAGA-AG 796
BSNT_01791___ 798 TGAG---TA---CTCAAAAGGAAT--------TACTAATA--CCTTA--A 829
..|| || || ||||| |.||||.| ||.|| |
BL03981___ntd 797 GCAGCTATACGGCT-----GGAATTTTAGAAGTGCTAAAAGCCCATATCA 841
BSNT_01791___ 830 AAAAATTAATTGGATCATGA 849
||..||.|
BL03981___ntd 842 AACGATAA------------ 849
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