Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05644 and BL03986

See Amino acid alignment / Visit BSNT_05644 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05644___ywlC.1.5803.seq
#    -bsequence dna-align/BL03986___ywlC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05644___ywlC-BL03986___ywlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05644___ywlC-BL03986___ywlC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05644___ywlC
# 2: BL03986___ywlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1108
# Identity:     738/1108 (66.6%)
# Similarity:   738/1108 (66.6%)
# Gaps:         131/1108 (11.8%)
# Score: 2350.0
# 
#
#=======================================

BSNT_05644___      1 ATGAAAACGAAAAG-ATGGTTTGTGGATGTAACTGACGAGTTATCCACAA     49
                     |||||||| ||||| ||||..|||||||||||....|||.||.|||||||
BL03986___ywl      1 ATGAAAAC-AAAAGTATGGACTGTGGATGTAAAACGCGATTTGTCCACAA     49

BSNT_05644___     50 A-TGATCCACAAATTGCACAAGC----AGCCGCTTTGCTCCGAG-AAAAT     93
                     | || |||||||||||||||.||    ||.|    ||||.| || |||||
BL03986___ywl     50 ACTG-TCCACAAATTGCACAGGCGGCAAGAC----TGCTTC-AGCAAAAT     93

BSNT_05644___     94 GAGGTCGTTGCCTTTCCGACAGAAACAGTATATGGCCTAGGCGCAAACGC    143
                     ||....|||||.|||||||||||.||.||.||.||.||.||.||||||||
BL03986___ywl     94 GAAACGGTTGCTTTTCCGACAGAGACTGTTTACGGTCTTGGTGCAAACGC    143

BSNT_05644___    144 AAAAAATACGGATGCCGTCAAAAAAATATATGAGGCGAAAGGACGGCCGA    193
                     .|||.|.|..||.||.||....||||||||.||.||||||||.|||||||
BL03986___ywl    144 CAAACACAGCGAAGCAGTAGCTAAAATATACGAAGCGAAAGGGCGGCCGA    193

BSNT_05644___    194 GCGATAATCCCCTGATTGTCCACATTGCGGATATCAGCCAGCTTG-AGGA    242
                     ||||.|||||.||.|||||||||||.||.||.||....||||||| ||.|
BL03986___ywl    194 GCGACAATCCGCTCATTGTCCACATCGCTGAAATTGAACAGCTTGCAGAA    243

BSNT_05644___    243 TTTAACGG----------GCC-CAGCGCCGGAAAAGGCGAAAACATTGAT    281
                     ||| .|||          ||| ||| ||||  |||.||        ||||
BL03986___ywl    244 TTT-GCGGAAGTTGATTCGCCTCAG-GCCG--AAATGC--------TGAT    281

BSNT_05644___    282 GAAACGGTTTTGGCCGGGAGCACTTACGCTCATACTGCCTTGCAAACCTG    331
                     |||.||.||||||||.||..|.||.||.||..|.|||||.|||||.||.|
BL03986___ywl    282 GAAGCGTTTTTGGCCCGGGCCGCTGACCCTTGTGCTGCCGTGCAAGCCCG    331

BSNT_05644___    332 GTGCGCTTTCACCTCGTGTAACGGCAGGTCTTGATACGGTTGCCATTAGA    381
                     |.|.|.|.||..|..|.||.|||||.||.||.||.|||||.||..|||||
BL03986___ywl    332 GGGTGTTATCCACAAGGGTGACGGCGGGGCTCGACACGGTCGCGGTTAGA    381

BSNT_05644___    382 ATGCCGGATCATCCACTTGCCCTTGCATTGATTCGCGAATCGGGACTGCC    431
                     |||||.||||||||..|.||.||||...|||||.|..|..|.||..|.||
BL03986___ywl    382 ATGCCTGATCATCCTGTGGCGCTTGAGCTGATTAGACAGGCCGGCGTTCC    431

BSNT_05644___    432 GATTGCAGCACCGAGCGCCAATCTATCAGGCAAGCCAAGTCCCACAAAAG    481
                     |.|.||.||.||||||||.|||||.||.||.||.||.|||||.||.||||
BL03986___ywl    432 GGTGGCTGCCCCGAGCGCAAATCTGTCCGGAAAACCGAGTCCGACGAAAG    481

BSNT_05644___    482 CAGAGCATGT-GGCACACGACTTGGATGGCCGCATAGCCGGTATTATGGA    530
                     |.|||||||| |.|| ||||.|||.||||.||.||.||.|||.|..|.||
BL03986___ywl    482 CCGAGCATGTCGTCA-ACGATTTGAATGGACGGATTGCGGGTGTCGTTGA    530

BSNT_05644___    531 TGGAGGCCCTACCGGAATCGGGGTTGAATCAACCGTGCTTTCATGTGCGG    580
                     .||.||||||||.|||.|.||||||||||||||.||..|||||||..|.|
BL03986___ywl    531 CGGCGGCCCTACAGGAGTAGGGGTTGAATCAACAGTTGTTTCATGCACCG    580

BSNT_05644___    581 ACGACATCCCTGTTCTCCTGCGTCCTGGCGGTATTACGAAGGAACA----    626
                     ..||.||.||.||..|..||.|.||.|||||..|.||.||.||.||    
BL03986___ywl    581 GTGAAATTCCGGTCATTTTGAGGCCGGGCGGCGTCACAAAAGAGCAGCTC    630

BSNT_05644___    627 -AATTGAAGCGGTGATCGGGCCGATTCATG-TGGATAAAGGGCTCAGCGA    674
                      ||  |||||||    |.||||...||.|| |.||..|.||.||||.|||
BL03986___ywl    631 GAA--GAAGCGG----CCGGCCCCGTCTTGATTGACCAGGGCCTCACCGA    674

BSNT_05644___    675 TCAAAACGAGAAGCCGATTTCTCCAGGGATGAAATATACACATTATGCGC    724
                     ..||||..||..|||.||.|||||.||||||||||||||.||||||||.|
BL03986___ywl    675 CGAAAAAAAGGCGCCTATGTCTCCCGGGATGAAATATACGCATTATGCAC    724

BSNT_05644___    725 CGACAGCGCCTCTTGCCATTTGCGAA---GGCAGCCCAGAGCGCATTCAG    771
                     ||..|||.||||||||.| |||.|||   ||.||  ..|||...|||||.
BL03986___ywl    725 CGGAAGCACCTCTTGCTA-TTGTGAACGGGGGAG--TTGAGGATATTCAA    771

BSNT_05644___    772 CACCTCATTCAAGAATATCAACAGGGCGGAAGACGG-------GTCGGTG    814
                     |..||.||..|..|||||||       |.|||||||       |||||||
BL03986___ywl    772 CGGCTGATCGACCAATATCA-------GAAAGACGGGATGAAAGTCGGTG    814

BSNT_05644___    815 TCCTGACGACAGAAGAAAACGCGGGC----GTTTAT-------------T    847
                     ||||.||||||||.|||    |||||    ||.|||             |
BL03986___ywl    815 TCCTTACGACAGAGGAA----CGGGCCGATGTCTATCAGGCCGATGCCGT    860

BSNT_05644___    848 CCGCTGATTATGTGAAGAGCTGCGGAAGACGGGCTCAGCTTGAGACTGTT    897
                     ||||             |.||||||.|||.|.|..|..|||||.||.|||
BL03986___ywl    861 CCGC-------------ATCTGCGGCAGAAGAGACCGACTTGAAACGGTT    897

BSNT_05644___    898 GCGGCAGGGCTGTATGATGCTTTGCGCAGCTTTGATGAGAATAAGG--TG    945
                     ||.||.||..|||||||.|.|.|.||||||||||||  |||.||.|  |.
BL03986___ywl    898 GCCGCCGGTTTGTATGACGTTCTCCGCAGCTTTGAT--GAAGAACGTCTC    945

BSNT_05644___    946 GATTTGATTATCTCGGAATCCTTTCCGGACACAGGTGTCGGTCTCGCCAT    995
                     |||||.|||.|..||||.||.|||||.||...|||.||.||.|..||.||
BL03986___ywl    946 GATTTTATTTTTGCGGAGTCTTTTCCTGAGGAAGGAGTGGGCCGGGCGAT    995

BSNT_05644___    996 TATGAACAGGCTGATGAAAGCCGCCGG-----------AGGAAGAGT-GA   1033
                     |||||||.|||||.|||||||.|||||           ..||||.|| | 
BL03986___ywl    996 TATGAACCGGCTGTTGAAAGCGGCCGGCCACCGCGTAATCGAAGCGTAG-   1044

BSNT_05644___   1034 TTCGCTGA   1041
                             
BL03986___ywl   1044 --------   1044


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