Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05639 and BL03989

See Amino acid alignment / Visit BSNT_05639 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05639___rpiB.1.5803.seq
#    -bsequence dna-align/BL03989___ywlF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05639___rpiB-BL03989___ywlF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05639___rpiB-BL03989___ywlF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05639___rpiB
# 2: BL03989___ywlF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity:     345/463 (74.5%)
# Similarity:   345/463 (74.5%)
# Gaps:          26/463 ( 5.6%)
# Score: 1281.0
# 
#
#=======================================

BSNT_05639___      1 ATGAAAGTAGCCATTGCATCGGATCATGGCGGCGTTCACATTCGAAATGA     50
                     |||||||||..|||||||||.|||||.|||||..|..|.||..||||.||
BL03989___ywl      1 ATGAAAGTAATCATTGCATCAGATCACGGCGGAATCAATATCAGAAAAGA     50

BSNT_05639___     51 AATCAAAGAGTTAATGGACGAATTGCAAATTGAATATATTGATATGGGCT    100
                     |||.|..|..||.||||||||||||.|.||.|||||....|||...||||
BL03989___ywl     51 AATTATGGCATTGATGGACGAATTGAACATCGAATACGAAGATTACGGCT    100

BSNT_05639___    101 GTGACTGCGG--CAGCGGCTCTGTCGATTATCCGGATTATGCTTTTCCGG    148
                     |.||.|||||  ||  ||.|||||.||.||.|||||||||||.|||||||
BL03989___ywl    101 GCGAATGCGGTTCA--GGATCTGTGGACTACCCGGATTATGCGTTTCCGG    148

BSNT_05639___    149 TGGCCGAAAAAGTGGTTAGCGGCGAAGTTGACAGAGGCATTTTAATTTGC    198
                     |.||..|||||||||..|.|||.||||..|||||||||||||||||.|||
BL03989___ywl    149 TCGCGCAAAAAGTGGCGAACGGGGAAGCCGACAGAGGCATTTTAATATGC    198

BSNT_05639___    199 GGGACAGGCATCGGCATGAGCATTTCCGCTAATAAAGTAAAAGGGATTCG    248
                     ||.|||||.||||||||||||||||||||.||||||||||||||.||.||
BL03989___ywl    199 GGAACAGGAATCGGCATGAGCATTTCCGCCAATAAAGTAAAAGGCATCCG    248

BSNT_05639___    249 CTGCGCGCTGGCGCACGATACCTTCAGCGCGAAGGCGACGAGGGAGCATA    298
                     ||||||.||.|..|||||....||||||||.||...|||.||.|||||.|
BL03989___ywl    249 CTGCGCCCTTGTCCACGACGTTTTCAGCGCCAAAATGACAAGAGAGCACA    298

BSNT_05639___    299 ATGACACAAACATCCTTGCGATGGGTGAACGGGTGATCGGACCTGGTTTG    348
                     |||||||.||..|.||||||||||||||||||||.|||||.||||||||.
BL03989___ywl    299 ATGACACGAATGTTCTTGCGATGGGTGAACGGGTCATCGGCCCTGGTTTA    348

BSNT_05639___    349 GCTCGGGAAATCGCAAAAACCTGGCTGACTACTGAGTTT---ACCGGG-G    394
                     ||..|.||.||.|||||....|||||.||.|||||||||   .||||| |
BL03989___ywl    349 GCGAGAGAGATTGCAAAGGTTTGGCTTACGACTGAGTTTTCAGCCGGGCG    398

BSNT_05639___    395 GAAGACACCAAACGCGTATTGGAAAAATCTCCGATTATGAAGA-------    437
                     |  .||.||...|||  ||.|||||||||.|||||||||||||       
BL03989___ywl    399 G--CACGCCGTCCGC--ATCGGAAAAATCGCCGATTATGAAGACAAGCAT    444

BSNT_05639___    438 GAAAAACCTGTAG    450
                     |||.||       
BL03989___ywl    445 GAATAA-------    450


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