Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05625 and BL03998
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:44
# Commandline: needle
# -asequence dna-align/BSNT_05625___atpA.1.5803.seq
# -bsequence dna-align/BL03998___atpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05625___atpA-BL03998___atpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05625___atpA-BL03998___atpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05625___atpA
# 2: BL03998___atpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1509
# Identity: 1257/1509 (83.3%)
# Similarity: 1257/1509 (83.3%)
# Gaps: 0/1509 ( 0.0%)
# Score: 5277.0
#
#
#=======================================
BSNT_05625___ 1 GTGAGCATCAAAGCTGAAGAGATTAGCACGCTGATAAAACAGCAAATACA 50
||||||||||||||||||||.||||||||.||.||||||||||||||..|
BL03998___atp 1 GTGAGCATCAAAGCTGAAGAAATTAGCACTCTCATAAAACAGCAAATTGA 50
BSNT_05625___ 51 AAATTATCAATCTGATATTGAAGTTCAAGACGTAGGTACAGTCATCCAAG 100
|||.|||||.|||||.||.||||||||.|||||||||||.||.||.||.|
BL03998___atp 51 AAACTATCAGTCTGAAATAGAAGTTCACGACGTAGGTACGGTAATTCAGG 100
BSNT_05625___ 101 TCGGTGACGGTATTGCACGTGTGCACGGCCTTGACAACTGTATGGCCGGT 150
|||||||||||||.|||||.||.|||||||||||.|||||||||||.|||
BL03998___atp 101 TCGGTGACGGTATCGCACGCGTACACGGCCTTGATAACTGTATGGCAGGT 150
BSNT_05625___ 151 GAACTTGTCGAATTTTCAAACGGTGTTTTGGGTATGGCTCAAAACCTTGA 200
||.|||||||||||||||||||||||..||||..|.|||||.||||||||
BL03998___atp 151 GAGCTTGTCGAATTTTCAAACGGTGTGCTGGGCTTAGCTCAGAACCTTGA 200
BSNT_05625___ 201 GGAATCAAACGTAGGTATCGTCATCTTAGGACCTTTCAGTGAGATCCGTG 250
.||||||||.|||||||||||.||.||.|||||||.||..||.|||||||
BL03998___atp 201 AGAATCAAATGTAGGTATCGTTATTTTGGGACCTTACAAAGACATCCGTG 250
BSNT_05625___ 251 AGGGAGACGAAGTAAAAAGAACAGGCCGCATCATGGAGGTTCCTGTTGGT 300
|.||.||||||||.||||||||.|||||.||||||||.||.|||||.||.
BL03998___atp 251 AAGGTGACGAAGTTAAAAGAACCGGCCGGATCATGGAAGTCCCTGTCGGC 300
BSNT_05625___ 301 GAAGAGTTAATCGGCCGTATTGTAAATCCGTTAGGCCAGCCGGTAGACGG 350
||||||.|..|||||||..||||.||.|||.|.||||||||.||.|||||
BL03998___atp 301 GAAGAGCTGCTCGGCCGCGTTGTCAACCCGCTCGGCCAGCCTGTTGACGG 350
BSNT_05625___ 351 ACTAGGCCCGATTCTGACAAGCAAAACTCGTCCGATCGAAAGCCCTGCAC 400
|.|.||||||.||||.|||||||||||.|||||||||||||||||.||.|
BL03998___atp 351 AATGGGCCCGGTTCTCACAAGCAAAACCCGTCCGATCGAAAGCCCGGCTC 400
BSNT_05625___ 401 CAGGCGTTATGGACCGTAAATCAGTTCATGAACCGCTTCAAACCGGTATC 450
|.||.||||||||.||||||||.||.||.||.|||||||||||.||.|||
BL03998___atp 401 CTGGAGTTATGGATCGTAAATCCGTACACGAGCCGCTTCAAACGGGGATC 450
BSNT_05625___ 451 AAAGCGATCGATGCACTGATTCCAATCGGCCGCGGCCAGCGTGAGCTGAT 500
|||.|.||||||||..|.|||||.||||||||||||||||||||||||||
BL03998___atp 451 AAATCAATCGATGCTTTAATTCCGATCGGCCGCGGCCAGCGTGAGCTGAT 500
BSNT_05625___ 501 CATCGGTGACCGTCAAACAGGTAAAACATCTGTTGCGATCGATGCGATTC 550
.|||||||||||||||||.||||||||.||..|||||||||||.|.||||
BL03998___atp 501 TATCGGTGACCGTCAAACGGGTAAAACGTCGATTGCGATCGATACAATTC 550
BSNT_05625___ 551 TGAACCAAAAAGACCAAGACATGATCTGCGTATATGTTGCGATCGGCCAA 600
||||.||.||||||||.||.|||||.||..|.|||||.||||||||.||.
BL03998___atp 551 TGAATCAGAAAGACCAGGATATGATTTGTATCTATGTCGCGATCGGTCAG 600
BSNT_05625___ 601 AAAGAATCAACAGTCCGCGGCGTAGTAGAAACATTGCGTAAACACGGCGC 650
||||||||.||||||||||||||.||.|||||..|.||.|||||||||||
BL03998___atp 601 AAAGAATCGACAGTCCGCGGCGTTGTCGAAACGCTTCGCAAACACGGCGC 650
BSNT_05625___ 651 GCTTGATTATACAATTGTTGTAACGGCGTCTGCGTCACAGCCGGCACCGC 700
.|||||.|||||.||.|||||.|||||.||.||.||||||||.||.||.|
BL03998___atp 651 CCTTGACTATACGATCGTTGTGACGGCTTCCGCTTCACAGCCTGCCCCTC 700
BSNT_05625___ 701 TTCTGTACCTGGCACCGTATGCTGGGGTTACAATGGCAGAAGAATTTATG 750
|..|||||||.||.||||||||.||||||.|.||||.|||.|||||.|||
BL03998___atp 701 TATTGTACCTCGCGCCGTATGCAGGGGTTGCGATGGGAGAGGAATTCATG 750
BSNT_05625___ 751 TACAGCGGCAAGCACGTTCTTGTTGTATACGATGATCTTTCTAAACAAGC 800
||||.||||||||||||.||.|||||.||.||.||.|||||.|||||.||
BL03998___atp 751 TACAACGGCAAGCACGTGCTGGTTGTGTATGACGACCTTTCAAAACAGGC 800
BSNT_05625___ 801 TGCCGCTTACCGTGAGCTGTCCTTGCTTCTTCGCCGTCCGCCAGGCCGTG 850
|.||||.||.|||||.|||||||||||||||||||||||.||.||.||||
BL03998___atp 801 TACCGCATATCGTGAACTGTCCTTGCTTCTTCGCCGTCCTCCTGGTCGTG 850
BSNT_05625___ 851 AAGCGTTCCCTGGGGATGTATTCTATCTTCATTCCCGTCTGCTTGAGCGT 900
||||.||||||||||||||||||||||||||.||||||.|||||||.||.
BL03998___atp 851 AAGCATTCCCTGGGGATGTATTCTATCTTCACTCCCGTTTGCTTGAACGC 900
BSNT_05625___ 901 GCAGCAAAGCTTAGCGACGCGAAAGGCGCAGGATCAATTACAGCTCTGCC 950
||.|||||..|.||||||||.|||||||.||||||..|.||.||.||.||
BL03998___atp 901 GCTGCAAAATTGAGCGACGCCAAAGGCGGAGGATCTTTAACGGCACTTCC 950
BSNT_05625___ 951 GTTCGTAGAAACACAAGCCGGAGATATCTCTGCTTATATTCCGACGAACG 1000
||||||.|||||.|||||.||.||.||.||.||.||.||||||||.||||
BL03998___atp 951 GTTCGTTGAAACGCAAGCAGGCGACATTTCGGCGTACATTCCGACAAACG 1000
BSNT_05625___ 1001 TCATTTCCATCACCGACGGACAGATCTTCCTGCAATCTGATTTGTTCTTC 1050
|||||||.|||||.||||||||.|||||||||||.|||||||||||||||
BL03998___atp 1001 TCATTTCGATCACTGACGGACAAATCTTCCTGCAGTCTGATTTGTTCTTC 1050
BSNT_05625___ 1051 TCAGGCGTACGTCCAGCGATCAACGCCGGATTGTCTGTATCCCGTGTCGG 1100
||.|||||.|||||.|||.|||||.|.|||||||||||||||||||||||
BL03998___atp 1051 TCTGGCGTGCGTCCTGCGGTCAACCCGGGATTGTCTGTATCCCGTGTCGG 1100
BSNT_05625___ 1101 CGGCTCAGCGCAAATCAAAGCGATGAAAAAAGTATCAGGTACTTTGCGTC 1150
|||.||.||||||||||||||||||||.|||||..|.|||||..||||.|
BL03998___atp 1101 CGGGTCCGCGCAAATCAAAGCGATGAAGAAAGTTGCCGGTACGCTGCGCC 1150
BSNT_05625___ 1151 TTGACCTTGCGTCATACCGTGAGCTGGAAGCATTCGCTCAATTCGGTTCT 1200
||||..|.||.||||||||||||||.|||||||||||.||||||||.||.
BL03998___atp 1151 TTGATTTGGCATCATACCGTGAGCTTGAAGCATTCGCACAATTCGGCTCA 1200
BSNT_05625___ 1201 GACCTCGACCAAGCGACTCAGGCAAAACTGAACCGCGGTGCGCGTACAGT 1250
||..|.||..|||||||.|||||.||.|||||.||||||||.|||||.||
BL03998___atp 1201 GATTTGGATAAAGCGACACAGGCGAAGCTGAATCGCGGTGCCCGTACGGT 1250
BSNT_05625___ 1251 TGAAGTGCTGAAGCAGGATCTGAACAAGCCGCTTCCGGTTGAAAAGCAAG 1300
||||||.||.||.|||||||||.||||.|||||||..|||||||||||.|
BL03998___atp 1251 TGAAGTACTTAAACAGGATCTGCACAAACCGCTTCGCGTTGAAAAGCAGG 1300
BSNT_05625___ 1301 TAGCCATTCTTTATGCGCTGACAAAAGGATATCTCGATGATATTCCTGTG 1350
|.||.|||||.|||||.|||||||.|||.|..||.||||||.|.|||||.
BL03998___atp 1301 TTGCGATTCTCTATGCTCTGACAAGAGGCTTCCTTGATGATGTGCCTGTT 1350
BSNT_05625___ 1351 GCGGATATCAGACGTTTTGAAGAAGAGTACTACATGTACCTTGACCAAAA 1400
|.||||||||.||||||||||||||||..||..|||||.|||||||||||
BL03998___atp 1351 GAGGATATCAAACGTTTTGAAGAAGAGCTCTTTATGTATCTTGACCAAAA 1400
BSNT_05625___ 1401 CCATAAAGACCTGCTTGACGGAATTGCGAAAACAGGAAACCTTCCTGCTG 1450
.||||||||.|||||.||...|||.||..|.|||||||||||||||||.|
BL03998___atp 1401 TCATAAAGATCTGCTCGATTCAATCGCCCAGACAGGAAACCTTCCTGCCG 1450
BSNT_05625___ 1451 ATGAAGACTTCAATGCTGCAATCGAAGGCTTCAAACGCACATTTGCACCA 1500
||||.|||.|.||.|.|||||||||||||||.|||||.||.||.||.|||
BL03998___atp 1451 ATGAGGACATGAAGGGTGCAATCGAAGGCTTTAAACGTACGTTCGCGCCA 1500
BSNT_05625___ 1501 AGCAACTAA 1509
|||||||||
BL03998___atp 1501 AGCAACTAA 1509
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