Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05616 and BL04004

See Amino acid alignment / Visit BSNT_05616 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05616___murAA.1.5803.seq
#    -bsequence dna-align/BL04004___murAA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05616___murAA-BL04004___murAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05616___murAA-BL04004___murAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05616___murAA
# 2: BL04004___murAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1321
# Identity:    1053/1321 (79.7%)
# Similarity:  1053/1321 (79.7%)
# Gaps:          20/1321 ( 1.5%)
# Score: 4215.5
# 
#
#=======================================

BSNT_05616___      1 TTGGAAAAAATCATCGTCCGCGGCGGTCAGAAGTTAAACGGCACAGTCAA     50
                     ||||||||||||||||||||||||||||..||||||||||||||||||||
BL04004___mur      1 TTGGAAAAAATCATCGTCCGCGGCGGTCGAAAGTTAAACGGCACAGTCAA     50

BSNT_05616___     51 AGTTGAAGGCGCTAAAAATGCCGTTTTACCTGTTATCGCTGCATCTTTAT    100
                     |||||||||.||.|||||||||||||||||.|||||||||||||||||||
BL04004___mur     51 AGTTGAAGGAGCAAAAAATGCCGTTTTACCAGTTATCGCTGCATCTTTAT    100

BSNT_05616___    101 TAGCAAGTGAAGAAAAAAGCGTAATTTGTGATGTACCTACGCTCTCCGAT    150
                     ||||.||||||||||||||||||||.||||||||.|||||||||||||||
BL04004___mur    101 TAGCCAGTGAAGAAAAAAGCGTAATATGTGATGTGCCTACGCTCTCCGAT    150

BSNT_05616___    151 GTATATACAATTAACGAAGTGTTGCGTCATTTAGGAGCAGATGTGCATTT    200
                     ||||||||.||||||||||||||.|||||||||||.|||..|||.|||||
BL04004___mur    151 GTATATACGATTAACGAAGTGTTACGTCATTTAGGCGCAAGTGTACATTT    200

BSNT_05616___    201 TGAAAATAATGAAGTGACTGTAAATGCTTCATACGCTTTGCAAACTGAAG    250
                     ||||||||||..|||.||.||..||||.||...|.|||||...||.||||
BL04004___mur    201 TGAAAATAATACAGTAACGGTTGATGCATCTCGCACTTTGTCTACGGAAG    250

BSNT_05616___    251 CACCTTTTGAATATGTTCGTAAAATGCGTGCGTCTGTGCTTGTCATGGGG    300
                     |.||.||.||||||||||||||||||||.||.||.||..|.||.|||||.
BL04004___mur    251 CTCCGTTCGAATATGTTCGTAAAATGCGCGCATCCGTATTGGTGATGGGT    300

BSNT_05616___    301 CCGCTTCTTGCGCGTACAGGTCATGCAAGAGTTGCACTTCCGGGCGGATG    350
                     |||||||||||.||.|||||.|||.|.|||||.||..|.||.||.|||||
BL04004___mur    301 CCGCTTCTTGCTCGCACAGGCCATTCGAGAGTGGCTTTGCCTGGAGGATG    350

BSNT_05616___    351 CGCAATTGGTTCCAGACCGATTGATCAGCATTTAAAAGGTTTTGAAGCAA    400
                     .|||||.|||||.||||||||.|||||||||.|.|||||.||||||||||
BL04004___mur    351 TGCAATCGGTTCAAGACCGATCGATCAGCATCTGAAAGGCTTTGAAGCAA    400

BSNT_05616___    401 TGGGCGCAGAAATCAAAGTCGGTAATGGCTTCATTGAAGCTGA-AGTAAA    449
                     ||||.|||.||||.||.|||||.||.|||||.|||||||| || .|||.|
BL04004___mur    401 TGGGGGCAAAAATTAAGGTCGGAAACGGCTTTATTGAAGC-GACTGTAGA    449

BSNT_05616___    450 AGGCCGACTGCAAGGCGCAAAAATTTATCTGGACTTCCCAAGTGTAGGAG    499
                     ||||||.||.|||||.||.||||||||.||.||.|||||.|||||.||||
BL04004___mur    450 AGGCCGCCTTCAAGGAGCGAAAATTTACCTTGATTTCCCTAGTGTCGGAG    499

BSNT_05616___    500 CTACAGAGAACCTGATTATGGCAGCCGCTCTAGCTGAAGGAACAACTACG    549
                     |.||.||.||||||||||||||.||.|||.|.|||||.||.||.||.||.
BL04004___mur    500 CAACTGAAAACCTGATTATGGCTGCAGCTTTGGCTGAGGGCACGACAACT    549

BSNT_05616___    550 CTGGAAAACGTGGCAAAAGAACCCGAAATCGTTGATTTAGCAAACTATAT    599
                     ||.|||||.|..||.|||||.||.||||||||||||.|.||.||||||||
BL04004___mur    550 CTCGAAAATGCTGCTAAAGAGCCTGAAATCGTTGATCTGGCTAACTATAT    599

BSNT_05616___    600 CAACGGCATGGGCGGAAAAATCCGCGGAGCTGGCACCGGCACCATCAAAA    649
                     |||.|..||||||||.|||||.||.||.||.||.||.||||||||.||||
BL04004___mur    600 CAATGCAATGGGCGGTAAAATTCGGGGTGCCGGTACAGGCACCATTAAAA    649

BSNT_05616___    650 TTGAAGGAGTCGAAAAGCTTCACGGCGTAAAACACCATATTATTCCTGAC    699
                     |||||||.||..|...||||||.||.|.||||||....||||||||||||
BL04004___mur    650 TTGAAGGCGTTAAGGCGCTTCATGGGGCAAAACATACGATTATTCCTGAC    699

BSNT_05616___    700 CGCATTGAAGCGGGCACATTTATGGTTGCTGCTGCAATCACTGAAGGAAA    749
                     ||.||.||.|||||.||.||.||||||||.||.||.||.||.|||||.||
BL04004___mur    700 CGGATAGAGGCGGGAACGTTCATGGTTGCCGCGGCGATTACCGAAGGGAA    749

BSNT_05616___    750 CGTATTAGTAAAAGGAGCCGTTCCTGAACACCTCACCTCTTTAATTGCAA    799
                     ||||.|.|||||.|||||.||||||||.|||.|.||.|||||||||||.|
BL04004___mur    750 CGTACTGGTAAAGGGAGCGGTTCCTGAGCACTTAACATCTTTAATTGCGA    799

BSNT_05616___    800 AAATGGAAGAGATGGGTGTAACAATTAAGGATGAAGGTGAAGGTCTGCGT    849
                     ||||||||||.|||||.||...|||...|||.|||||.||.|||||.||.
BL04004___mur    800 AAATGGAAGAAATGGGCGTTCAAATCTTGGAAGAAGGAGACGGTCTTCGG    849

BSNT_05616___    850 GTCATCGGCCCGAAAGAACTTAAACCGATTGACATCAAAACAATGCCTCA    899
                     .|||||||.||....|||.|.||.||.|||||..|.|||||||||||.||
BL04004___mur    850 ATCATCGGTCCTTCTGAATTGAAGCCTATTGATTTAAAAACAATGCCACA    899

BSNT_05616___    900 CCCGGGCTTCCCGACTGATATGCAGTCACAAATGATGGCGCTTCTGCTTC    949
                     .||.||.|||||||||||||||||||||||.||||||||.|||.||.|.|
BL04004___mur    900 TCCAGGTTTCCCGACTGATATGCAGTCACAGATGATGGCTCTTTTGATGC    949

BSNT_05616___    950 GTGCAAGCGGCACAAGCATGATTACAGAAACCGTTTTTGAAAACCGTTTT    999
                     |.||||..||.||.||||||||.|||||||||||.|||||.|||||.||.
BL04004___mur    950 GCGCAAATGGAACCAGCATGATCACAGAAACCGTCTTTGAGAACCGCTTC    999

BSNT_05616___   1000 ATGCATGCGGAAGAATTCCGCCGTATGAATGGTGATATCAAGATTGAAGG   1049
                     |||||.|||||||||||||||||||||||.||.|||||.||.||.|||||
BL04004___mur   1000 ATGCACGCGGAAGAATTCCGCCGTATGAACGGAGATATTAAAATCGAAGG   1049

BSNT_05616___   1050 ACGTTCTGTCATCATTAACGGTCCTGTACAGCTTCAGGGAGCTGAAGTTG   1099
                     .|||||||||||||||||.||||||||.||||||||.||.||||||||||
BL04004___mur   1050 CCGTTCTGTCATCATTAATGGTCCTGTGCAGCTTCAAGGCGCTGAAGTTG   1099

BSNT_05616___   1100 CAGCGACTGATTTGCGTGCAGGTGCAGCGCTGATTCTTGCGGGGTTAGTG   1149
                     |.||.||.|||.|.||.||.||.|||||.||.||.|||||.||..|.||.
BL04004___mur   1100 CCGCAACGGATCTTCGCGCCGGCGCAGCTCTTATCCTTGCTGGCCTTGTT   1149

BSNT_05616___   1150 GCTGAAGGTCACACACGTGTTACTGAATTGAAGCACTTAGACCGCGGTTA   1199
                     |||||.|||||.|||||.||.||.|||||.||.||.||||||||.||.||
BL04004___mur   1150 GCTGACGGTCATACACGCGTAACCGAATTAAAACATTTAGACCGTGGATA   1199

BSNT_05616___   1200 CGTTGATTTCCATCAGAAGCTTGCCGCTCTGGGCGCAGACATCGAACGTG   1249
                     .||..|.|||||.||.||.|||||||.|||.|||||.||.||.||.||.|
BL04004___mur   1200 TGTCAACTTCCACCAAAAACTTGCCGGTCTCGGCGCTGATATTGAGCGCG   1249

BSNT_05616___   1250 TAAATGATG-AGTCTGCTTCTGAGCA--------AGAGAATAAAGAAGTC   1290
                     |.||.|||| ||         .||||        .||.|||||||||||.
BL04004___mur   1250 TTAACGATGAAG---------AAGCAGTTCATATTGAAAATAAAGAAGTT   1290

BSNT_05616___   1291 GTTTCTGACTTAAATGCATAA   1311
                     ||.||.||.||||||||||||
BL04004___mur   1291 GTATCCGATTTAAATGCATAA   1311


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