Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05611 and BL04006
See
Amino acid alignment /
Visit
BSNT_05611 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence dna-align/BSNT_05611___ywmC.1.5803.seq
# -bsequence dna-align/BL04006___ywmC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05611___ywmC-BL04006___ywmC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05611___ywmC-BL04006___ywmC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05611___ywmC
# 2: BL04006___ywmC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 740
# Identity: 494/740 (66.8%)
# Similarity: 494/740 (66.8%)
# Gaps: 109/740 (14.7%)
# Score: 1535.0
#
#
#=======================================
BSNT_05611___ 1 ATGAAGAA-AAGACTTTCACTGATCATGATGAC----AGGATTGCT---T 42
|||||||| |||| |..||.||..|||..|||| |.|.|| || |
BL04006___ywm 1 ATGAAGAAGAAGA-TGACATTGGGCATTTTGACCGCTATGGTT-CTCAGT 48
BSNT_05611___ 43 TTTGGATTAACTTCACCTGCTTTTGCAGCT--GAAAAGACAGAAACGGAG 90
.|||| |||.||||||||||||||| |||||.||| ||||
BL04006___ywm 49 CTTGG------TTCGCCTGCTTTTGCAGCTGAGAAAAAACA-----GGAG 87
BSNT_05611___ 91 GCTAA-AG-CGCCG-----GCG---AACGTGGCGGTCTTGCTTGATGCCA 130
| ||| || .|||| ||| |||||.|||.|..||||||||||.|
BL04006___ywm 88 G-TAACAGTTGCCGAAGATGCGCCCAACGTTGCGATTATGCTTGATGCAA 136
BSNT_05611___ 131 GCGGAAGTATGGCGAAAAGAATAGAT----GGTGTATCTAAAT------T 170
||||.||.|||||.|||| |||| ||.||.||.|||| |
BL04006___ywm 137 GCGGCAGCATGGCTAAAA----AGATCGGCGGGGTCTCAAAATACGAGCT 182
BSNT_05611___ 171 TAATTCAGCCAAAAAAGAAATTTCAAAGTTTGCG---AGCTCATTG---C 214
| ||||||||.||| ||| |||| ||| |
BL04006___ywm 183 T------GCCAAAAATGAA------------GCGTTCAGCT--TTGGTTC 212
BSNT_05611___ 215 CA-----GAA---GGAACTCAGGTGAAAATGAGCGTGTTTGGCTCTGAAG 256
|| ||| |.|| |.|||...|||||.||.||.||.||.||.|
BL04006___ywm 213 CAAGCTTGAAAATGCAA---ACGTGCTCATGAGAGTTTTCGGTTCAGAGG 259
BSNT_05611___ 257 GAAACAATAAAAATTCCGGAAAAGTTCAGTCATGTGAAGCCATTCGCAA- 305
|||||||||||||||||||||||||.|||||.|| ||.| ||||
BL04006___ywm 260 GAAACAATAAAAATTCCGGAAAAGTGCAGTCCTG------CAAT-GCAAT 302
BSNT_05611___ 306 ------CGTATACGGCTTCCAAAGCTTTAACGAGCAAAGTTTCCTCAATT 349
.||.|||||||||||||..|.|.||||||||||.||||.|||||
BL04006___ywm 303 CAGAGGGGTGTACGGCTTCCAAACGTATGACGAGCAAAGCTTCCGCAATT 352
BSNT_05611___ 350 CTCTCAATAC--AATTGGGCCGACTGGCTGGACGCCAATTGCCAAAGCGC 397
| ||.|| || .||.||.|||||.||.|||||.||.||.||.||.||||
BL04006___ywm 353 C-CTTAA-ACGGCATCGGACCGACCGGATGGACACCGATCGCAAACGCGC 400
BSNT_05611___ 398 TGAACGAGGCGAAATCTTCTTTTGACCAGCTTGATGCAA-AAGGGGAAAA 446
||.|.||.||.|||....|..||||||||||.|| ||| ||.|||||||
BL04006___ywm 401 TGCAAGATGCAAAAAACGCGCTTGACCAGCTGGA--CAACAACGGGAAAA 448
BSNT_05611___ 447 A-GTGGTGTATCTGTTGACAGACGGTGAGGAAACGTGCGGAGGAAACCCG 495
| ||.||.||||||.|||||||||||||||||||.||||||||.||.|||
BL04006___ywm 449 ACGTCGTCTATCTGCTGACAGACGGTGAGGAAACATGCGGAGGCAATCCG 498
BSNT_05611___ 496 ATTAAAACAGCAAAGGAACTGCAAAAAGAGAATATCACTGTTAATGTGAT 545
.|.|||...||||..|||||||..|||...|||.....|||.||.|||||
BL04006___ywm 499 GTAAAAGTCGCAACAGAACTGCGCAAATCCAATGCGGTTGTCAACGTGAT 548
BSNT_05611___ 546 CGGCTTTGATTATAAAGAGGGA-TACAAAGGCCAGCTGAACGCAATTGCG 594
|||||||||||||.||| |.|| |.|.|.||.||..|||.|...||.||.
BL04006___ywm 549 CGGCTTTGATTATGAAG-GAGACTTCCACGGACAATTGACCAGTATCGCA 597
BSNT_05611___ 595 AAAGTAGGCGGCGGTGAATACTTCCCGGTTTATACCCAAAAAGATGTTGA 644
..||..||||||||||||||.||||.||...|.||..||||.||..|..|
BL04006___ywm 598 GCAGCTGGCGGCGGTGAATATTTCCAGGCAAAAACTAAAAATGACATCAA 647
BSNT_05611___ 645 GAAAATTTTCACTCAGCAATCACTAATGTTATCTAAATAA 684
.|.||||||.||||||.||.||.|...|.|.|||||||||
BL04006___ywm 648 AAGAATTTTTACTCAGGAAGCAATTGAGCTTTCTAAATAA 687
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.