Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04712 and BL04019
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:57
# Commandline: needle
# -asequence dna-align/BSNT_04712___yuiI.1.5803.seq
# -bsequence dna-align/BL04019___yuiI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04712___yuiI-BL04019___yuiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04712___yuiI-BL04019___yuiI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04712___yuiI
# 2: BL04019___yuiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 943
# Identity: 585/943 (62.0%)
# Similarity: 585/943 (62.0%)
# Gaps: 167/943 (17.7%)
# Score: 1708.0
#
#
#=======================================
BSNT_04712___ 1 ATG---AAAGAGCAAA----CAACAGACCGGACAAATG--GCGGGACATC 41
||| .|||| ||| ||.|||.|.| ..|||| ||.|
BL04019___yui 1 ATGGCTCAAGA--AAAACTTCAGCAGTCTG--TCAATGCTGCTG------ 40
BSNT_04712___ 42 AAACGTAT-----TTACGATTCCTGGTACGGAA-----GTGCGTATGATG 81
||.|.|| ||.||||.||.||.||.||| |||| |||
BL04019___yui 41 -AATGCATCCCGGTTGCGATACCGGGGACAGAACAGCGGTGC-----ATG 84
BSNT_04712___ 82 TCTTCACGCAATGAAAACCGTACCTATCACATTTTTATCTCGAAACCTAG 131
..|||||...|||..|.|||.||.||||..||||||||..||||||| |.
BL04019___yui 85 CGTTCACTGGATGGGAGCCGCACATATCGGATTTTTATTGCGAAACC-AT 133
BSNT_04712___ 132 TACG----CCGCCGCCACCCGCTGGTTATCCTGTGATTTATCTGCTGGAT 177
|..| |.|||| |||||.||.|||||.||||||||||||||.|||
BL04019___yui 134 TTGGGGAACAGCCG---CCCGCAGGATATCCCGTGATTTATCTGCTTGAT 180
BSNT_04712___ 178 GCCAATTCTGTCTTCGGAACGATGACGGAAGCCGTT-CGAATACAGGGAC 226
||||||||.||.||.|||||||||..|| ||.|||| ||.||.|||...|
BL04019___yui 181 GCCAATTCCGTGTTTGGAACGATGGTGG-AGGCGTTGCGGATGCAGTCGC 229
BSNT_04712___ 227 GCCGACCCGAAAAAACCGGGGT---GATCCCTGCAGTGATCGTCGGCATT 273
||||.|||||.||||||||.|| || |.||.||.||.||||||||.
BL04019___yui 230 GCCGTCCCGATAAAACCGGTGTAGGGA---CGGCTGTTATTGTCGGCATC 276
BSNT_04712___ 274 GGCTATGAGACAGCGGAGCCGTTCTCCTCAGCACGCCACCGG-------- 315
||.||.||||| .|.||.|| |||..| |||||
BL04019___yui 277 GGTTACGAGAC-----CGACGCTC-CCTTTG------ACCGGGGGCGGTA 314
BSNT_04712___ 316 ----GATTTTACAATGCCAACAGCCCAATCG------AAGCTGCCGGAAA 355
||||||||..||| |..||||| .|||||||....|
BL04019___yui 315 TTATGATTTTACTCTGC------CGGAATCGGGCGCTGAGCTGCCCATGA 358
BSNT_04712___ 356 GGCCCGACGGCAG-AGAATGGCCGGAGCATGGCGGAGCGGAGGGCTTTT- 403
|||||||.|| || |||.||||||||.|..|||||.|| ||..||||||
BL04019___yui 359 GGCCCGATGG-AGCAGACTGGCCGGAACCAGGCGGGGC-GAAAGCTTTTC 406
BSNT_04712___ 404 --TCAGATTTATTGAAGAGGATTTAAAACCGGAGATAGAACGAGATTACC 451
|| .||.||.|||.||.|.|||||.||||||||.||||..||.|.|.
BL04019___yui 407 TGTC--CTTCATCGAACAGCAGTTAAAGCCGGAGATCGAACAGGAATTCA 454
BSNT_04712___ 452 AGATTGATAAAAAAAGACAAACAATCTTTGGCCATTCGCTCGGAGGGCTT 501
.|||||||...|||||.||..|.||.||.||.|||||.||.||.||.|||
BL04019___yui 455 CGATTGATGTGAAAAGGCAGGCGATTTTCGGTCATTCCCTAGGCGGACTT 504
BSNT_04712___ 502 TTCGTGCTGCAGGTGCTGCTAACAAAGCCCGATGCGTTTCAAACGTATAT 551
||.||.||||||...|||.|.|||||.||.|||...|||||.||.|||||
BL04019___yui 505 TTTGTCCTGCAGACCCTGTTTACAAAACCGGATCTATTTCAGACATATAT 554
BSNT_04712___ 552 CGCGGGAAGTCCGTCCATTCATTGGAATAAACCGTTTATTCTCGAGAAAA 601
|||.||.|||||||||||.||||||.|| ||||...||.|.||.|||
BL04019___yui 555 CGCCGGCAGTCCGTCCATCCATTGGCAT---CCGTCATTTTTTGATAAA- 600
BSNT_04712___ 602 CGGACCAT---TTCGTCTCTCTCACCAAGAA--------AAACAATCA-G 639
||.||| ||.||.|| ||| ||.| |.| |
BL04019___yui 601 --GAGCATGACTTTGTTTC---------GAAGTTGCAGGAAGC--TGATG 637
BSNT_04712___ 640 CCTATCAA----TATCCTGCTTGCCGCAGGAGAATTGGAGCAGCATCATA 685
.|.||..| ||| ||||||..||.||||||.|.||..||...||||
BL04019___yui 638 GCGATGTAAAGGTAT--TGCTTGGGGCCGGAGAACTCGAAAAGACGCATA 685
BSNT_04712___ 686 AAAGCCGGATGAATGATAATGCAAGGGAGCTTTATGAGCGGCTGGCCGTT 735
|||||.|||||||.||.|||||||....|||....||.||..||||||.|
BL04019___yui 686 AAAGCGGGATGAACGACAATGCAAAAAGGCTGGCCGACCGCTTGGCCGCT 735
BSNT_04712___ 736 TTATCTGAA---CAAGGCATACGGGCAGA-----ATTTTGCGAGTTTTCA 777
|| .||| ||.||..|.||.||.|| || ||.|||..|
BL04019___yui 736 TT---GGAAAGTCAGGGGGTTCGCGCGGAGTACCAT-----GAATTTAAA 777
BSNT_04712___ 778 GGAGAAGGACATATTTCAGTTCTTCCTGTTTTGGTCAGCAGGGCGCTGCG 827
||.|||||.|||||.||.|||||.|||||.||..|||||||.||||||||
BL04019___yui 778 GGGGAAGGTCATATATCGGTTCTGCCTGTGTTAATCAGCAGAGCGCTGCG 827
BSNT_04712___ 828 TTTTGCGCTCCACCCTGACGGACCGCATCTTTCAATGGGCTGA 870
.|||||..||.|.|||||..||
BL04019___yui 828 GTTTGCCTTCAAGCCTGATTGA--------------------- 849
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