Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04707 and BL04022
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:56
# Commandline: needle
# -asequence dna-align/BSNT_04707___dhbE.1.5803.seq
# -bsequence dna-align/BL04022___dhbE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04707___dhbE-BL04022___dhbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04707___dhbE-BL04022___dhbE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04707___dhbE
# 2: BL04022___dhbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1716
# Identity: 1144/1716 (66.7%)
# Similarity: 1144/1716 (66.7%)
# Gaps: 189/1716 (11.0%)
# Score: 3628.0
#
#
#=======================================
BSNT_04707___ 1 ATGCTGAAAGGATTTACGCCTTGGCCTGATGAGTTAGCTGAGACCTATCG 50
|||||||||||||..|||.|.|||||..|.|||||.||.||.|..|||||
BL04022___dhb 1 ATGCTGAAAGGATGCACGACATGGCCGAAGGAGTTTGCGGATAAATATCG 50
BSNT_04707___ 51 AAAGAATGGCTGCTGGGCCGGCGAGACGTTTGGGGATTTGTTAAGAGACC 100
.|||.|.||.||||||...|||||.||.|||||..|..||.|.||.||.|
BL04022___dhb 51 GAAGGAGGGATGCTGGCGAGGCGAAACTTTTGGAAAAATGCTGAGGGAGC 100
BSNT_04707___ 101 GGGCAGCCAAATATGGCGACCGCATTGCGATTACATGCGGAAACACCCAT 150
||||.|..|||||.||...|||||||||..||||||.||||.|.|.||||
BL04022___dhb 101 GGGCCGAAAAATACGGAAGCCGCATTGCCCTTACATACGGAGATATCCAT 150
BSNT_04707___ 151 TGGAGCTATCAAGAGCTTGACACAAGGGTTGATCGTTTGGCTGCCGG-AT 199
|..|||||||..|||.|.||||..||.|..|||..||||||||.||| .|
BL04022___dhb 151 TTAAGCTATCGTGAGTTAGACAGGAGAGCCGATTCTTTGGCTGGCGGTCT 200
BSNT_04707___ 200 TTCAGAAGCTCGGCATTCAACAGATGGATCGTGTCGTGGTGCAGCTGCCA 249
||.| |||||.||.||..||.|.|..|||||.|||||.||.||||||||.
BL04022___dhb 201 TTTA-AAGCTGGGGATCAAAAAAAATGATCGCGTCGTTGTCCAGCTGCCG 249
BSNT_04707___ 250 AATATCAAAGAGTTTTTTGAAGTCATT--TTCGCGCTTTTCCGTCTGGGG 297
|||||||..|||||||||||||| || ||.|||||.|||||..|.||.
BL04022___dhb 250 AATATCATCGAGTTTTTTGAAGT--TTGCTTTGCGCTCTTCCGGATCGGA 297
BSNT_04707___ 298 GCGCTTCCAGTCTTCGCACTGCCTTCTCATCGAAGC--AGTGAAATTACA 345
||.||.||.||.||.||.||.||.||.||||| || ||.||.||.||.
BL04022___dhb 298 GCTCTGCCTGTTTTTGCGCTTCCATCGCATCG--GCATAGCGAGATCACG 345
BSNT_04707___ 346 TATTTTTGCGAGTTTGCTGAAGCGGCTGCATATATCATTCCCG------A 389
|||||||||||||||.|||||||.|||||.||.||.||||||| |
BL04022___dhb 346 TATTTTTGCGAGTTTTCTGAAGCTGCTGCCTACATTATTCCCGATCGTCA 395
BSNT_04707___ 390 CGCTTATTCCGGTTTTGACTATCGTACGCTTGCCAGACAGGTTCAAAG-- 437
|||..| .||||||||.||.|.|||.||.|||||||| ||||
BL04022___dhb 396 CGCAAA------GTTTGACTACCGCAAGCTGGCGAGACAGGT--AAAGGA 437
BSNT_04707___ 438 CAAGTTG--------CCGACTTTGAAAAACATCATTGTCGCAGGTGAGGC 479
.|||.|| |||.| |..||||||||||.||.||..|
BL04022___dhb 438 GAAGCTGCAAGGGCTCCGTC--------ATGTCATTGTCGCCGGGGAACC 479
BSNT_04707___ 480 AGAGGAATTTTTGCCGCT--CGAGGATTT----GCATACAGAACCT--GT 521
.|||||.|||....|||| |.||..||| .||..|.|.|||| |.
BL04022___dhb 480 GGAGGAGTTTGAAGCGCTGGCAAGCCTTTATGATCAGCCGGCACCTCCGC 529
BSNT_04707___ 522 AAAACTG-----CCTGAAGTCAAATCTTCGGATGTGGCGTTCCTCCAGCT 566
||||| | ||.||| |||||.||.||.||.|||.|
BL04022___dhb 530 AAAAC-GTCTATCCAGAA------------GATGTCGCCTTTCTTCAGTT 566
BSNT_04707___ 567 TTCTGGCGGGAGCACCGGGCTATCGAAACTGATTCCGAGGACCCACGATG 616
.||.||.||.|||||.||.||.||.||.|||||.||||||||.||.||||
BL04022___dhb 567 GTCGGGGGGAAGCACAGGTCTGTCCAAGCTGATCCCGAGGACGCATGATG 616
BSNT_04707___ 617 ACTACATATACAGCCTGA-----AGCGGAGTGTGGAGGTCTGCTGGCTCG 661
|.||.|||||||||.||| ||||.| |||.|.|||.||||||
BL04022___dhb 617 ATTATATATACAGCTTGAGGGTCAGCGCA-----GAGATTTGCAGGCTCG 661
BSNT_04707___ 662 ACCACAGCACGGTGTA-CTTGGCCGCGCTGCCGATGGCACATAATTATCC 710
|.||||.||..||.|| ||| ||.||.||.|||||.||.||.||||||||
BL04022___dhb 662 ATCACAACAGCGTATATCTT-GCGGCTCTTCCGATCGCTCACAATTATCC 710
BSNT_04707___ 711 GCTGAGCTCACCTGGCGTTCTCGGCGTA--TTATACGCTGGAGGAAGAGT 758
|||.|||||.||.||.||.|||| ||| .|.|||||.|||||..||||
BL04022___dhb 711 GCTCAGCTCGCCGGGAGTGCTCG--GTACGCTGTACGCGGGAGGCCGAGT 758
BSNT_04707___ 759 GGTATTATCTCCTT-CTCCA------AGTCCAGATGACGCATTTCCTTTA 801
.| ||||| |..|| ||.||.|||||..|.||.|||.|.
BL04022___dhb 759 CG-------TCCTTGCATCAGGAGGCAGCCCGGATGAAACCTTCCCTCTG 801
BSNT_04707___ 802 ATTGAACGGGAAAAGGTCACGATAACCGCTCTTGTTCCGCCTCTTGCGAT 851
||.||...|||.|.|||.|||||.||.|..||.||.|||||.||||||.|
BL04022___dhb 802 ATCGATAAGGAGAGGGTAACGATCACGGGACTCGTACCGCCGCTTGCGTT 851
BSNT_04707___ 852 GGTATGGATGGATGCGGCATCCTCACGCTGTGATGATTTATCCAGCCTTC 901
..|.|||.|.|||||.||.||..|.|||.|.||.||.||.||.|||||.|
BL04022___dhb 852 AATCTGGCTTGATGCTGCTTCGGCGCGCCGGGACGACTTGTCAAGCCTCC 901
BSNT_04707___ 902 AAGTGCTGCAGGTCGGCGGTGCCAAGTTTAGTGCTGAAGCCGCGCGCAGG 951
|.||..|.||.||||||||.||.||.||.||.||.|||||.|| |||
BL04022___dhb 902 AGGTCTTTCAAGTCGGCGGAGCGAAATTCAGCGCCGAAGCTGC---CAG- 947
BSNT_04707___ 952 GTAAAAGC----------TGTTTTCGGCTGCACGCTGCAGCAGGTATTCG 991
|.|| ||||| |||||||..|||||||||||.|..|
BL04022___dhb 948 ----ACGCGTTTCATCGGTGTTT--GGCTGCAAACTGCAGCAGGTTTATG 991
BSNT_04707___ 992 GAATGGCAGAGGGTCTCGTCAATTATACGAGATTGGATGATCCTGAGGAG 1041
|.||||||||.|||||.|||||.|||||.|||.|.|||||||||||.||.
BL04022___dhb 992 GCATGGCAGAAGGTCTGGTCAACTATACCAGACTTGATGATCCTGAAGAC 1041
BSNT_04707___ 1042 ATCATTGTCAACACCCAAGGAAAACCGATGTCCCCATATGA------TGA 1085
|..||.||..||||.|||||.|..||.|||||.||.|.||| |.|
BL04022___dhb 1042 ACGATCGTTCACACACAAGGCAGGCCAATGTCTCCGTTTGACGAGATTAA 1091
BSNT_04707___ 1086 AGTGCGTGTTTGGGATGATCATGATCGCGACGTAAAACCTGGTGAAACAG 1135
|.| ||| |||.||..|.|..|||||..|...|||.||..|.||||
BL04022___dhb 1092 AAT---TGT---GGACGAAAAAGGACGCGAACTTGGACCCGGACAGACAG 1135
BSNT_04707___ 1136 GCCATCTGCTGACGCGGGGACCGTATACAATTCGCGGTTACTATAAGGCG 1185
|..|.||||||||..|.||.||.|||||.||||||||.||.||.||.||.
BL04022___dhb 1136 GAGAGCTGCTGACAAGAGGTCCATATACGATTCGCGGCTATTACAAAGCT 1185
BSNT_04707___ 1186 GAAGAGCATAATGCTGCTTCA-----TTTACTGAGGACGGTTTTTACCGC 1230
||.|||||.||||| || ||.|||||.|||||.||||||||.
BL04022___dhb 1186 GAGGAGCACAATGC-----CAAAGCGTTCACTGAAGACGGGTTTTACCGT 1230
BSNT_04707___ 1231 ACGGGTGA------TA--------TCGTCAGGCTGACACGAGACGGCTAT 1266
|||||.|| || ||.||| ||||||
BL04022___dhb 1231 ACGGGAGACTTGGTTAAAGTCAATTCATCA--------------GGCTAT 1266
BSNT_04707___ 1267 ATTG-TCGTTGAAGGCCGTGCGAAGGATCAAATTAACCGTGGGGGAGAAA 1315
||| |.||||||||.||.||.||.||.||.||.|||.|.||.||.||.|
BL04022___dhb 1267 -TTGATTGTTGAAGGACGAGCTAAAGACCAGATCAACAGAGGCGGTGAGA 1315
BSNT_04707___ 1316 AGGTTGCGGCTGAAGAGGTAGAAAATCATCTGCTGGCGCATCCGGCTGTC 1365
|||||||.||.|||||.||.|||||.||||||||.||.|||||||..||.
BL04022___dhb 1316 AGGTTGCCGCGGAAGAAGTGGAAAACCATCTGCTCGCACATCCGGGGGTA 1365
BSNT_04707___ 1366 CATGATGCGGCAATGGTCTCCATGCCTGATCAATTTCTTGGCGAGAGATC 1415
|..||||||||..|.|||||.|||||.|||||||||||.|||||.||..|
BL04022___dhb 1366 CTCGATGCGGCGGTTGTCTCGATGCCGGATCAATTTCTCGGCGAAAGGGC 1415
BSNT_04707___ 1416 TTGTGTGTTCATTAT---TCCCAGAGATGAA---GCCCCAAAAGCCGCAG 1459
.||||..|..||||| ||.|.|.|.||.| ||.| || ||.|
BL04022___dhb 1416 GTGTGCATATATTATCCCTCGCGGCGCTGCACCGGCTC----AG--GCTG 1459
BSNT_04707___ 1460 AGCTCAAAGCATTTTTGAGAGAGCGCGGACTGGCGGCATATAAAATCCCT 1509
||.|..||.|.|||||||||||..|.||.||.||.||.||.|||||.||.
BL04022___dhb 1460 AGTTGCAATCGTTTTTGAGAGAAAGGGGCCTTGCAGCCTACAAAATACCC 1509
BSNT_04707___ 1510 GACCGAGTTGAATTTGTCGAATCCTTCCCGCAGACAGGGGTAGGAAAGGT 1559
|||||.||.|||.|.||.|||...||||||||||||||.||||||||.||
BL04022___dhb 1510 GACCGGGTAGAAATGGTTGAAGATTTCCCGCAGACAGGCGTAGGAAAAGT 1559
BSNT_04707___ 1560 AAGCAAAAAGGCTCTTCGTGAAGCTATTTCCGAAAAACT-TCTTGCAGGG 1608
.||||||||.|..||.||||..||.|||.|.||||||.| || |||||..
BL04022___dhb 1560 CAGCAAAAAAGAGCTGCGTGCGGCGATTGCTGAAAAAATGTC-TGCAGCT 1608
BSNT_04707___ 1609 GCAAAA----AAATAA 1620
| |.|| |.||.|
BL04022___dhb 1609 G-AGAATGTCAGATGA 1623
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