Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05580 and BL04028

See Amino acid alignment / Visit BSNT_05580 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05580___spoIIQ.1.5803.seq
#    -bsequence dna-align/BL04028___spoIIQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05580___spoIIQ-BL04028___spoIIQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05580___spoIIQ-BL04028___spoIIQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05580___spoIIQ
# 2: BL04028___spoIIQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 921
# Identity:     664/921 (72.1%)
# Similarity:   664/921 (72.1%)
# Gaps:          93/921 (10.1%)
# Score: 2389.5
# 
#
#=======================================

BSNT_05580___      1 ATGAGAGAGGAAGAAAAGAA---AACTTCTCAAGTCAAAAAACTTCAGCA     47
                     ||||.|||||||||||||||   .|||||..||.|||.|||.||.||.||
BL04028___spo      1 ATGAAAGAGGAAGAAAAGAATCGTACTTCCAAAATCACAAAGCTGCAACA     50

BSNT_05580___     48 GTTTTTTCGTAAACGCTGGGTGTTCCCTGCAATTTACTTAGTC-AGTGCG     96
                     .||||||||||||||||||||.||.||.||.||.|| ||.|.| |||||.
BL04028___spo     51 ATTTTTTCGTAAACGCTGGGTATTTCCGGCCATCTA-TTTGACAAGTGCC     99

BSNT_05580___     97 GCCGTCATTTTAACAGCTGTCCTTTGGTATCAATCAGTATCAAATGATGA    146
                     |.|||..|.|||||.||.||.||.|||||||||||.|..||.||..|.||
BL04028___spo    100 GTCGTTGTATTAACCGCCGTTCTATGGTATCAATCGGCTTCTAACAACGA    149

BSNT_05580___    147 GGTAAAGGATCAGTTGGCTGATAACGGC-GGAAACTCCGCATATGACAAC    195
                     .|||||.||.|||.|.||.||..|.||| .|||| ||.||.|||||.|||
BL04028___spo    150 TGTAAAAGACCAGCTTGCAGACGATGGCAAGAAA-TCAGCCTATGATAAC    198

BSNT_05580___    196 AACGACGATGCAGTTGAAGTAGGAAAGTCAATGGAAAATGTCGCAATGCC    245
                     ...||.|||||.||.||||||||.||..||.|.|||||||||||||||||
BL04028___spo    199 CGGGATGATGCGGTAGAAGTAGGCAAACCAGTCGAAAATGTCGCAATGCC    248

BSNT_05580___    246 AGTTGTTGATTCTGAAAACGTTTCTGTTGTGAAAAAGTTCTATGAAACCG    295
                     .||||.||||||||||||.|||||.||.||.||||||||.|.||||||.|
BL04028___spo    249 GGTTGCTGATTCTGAAAATGTTTCCGTCGTTAAAAAGTTTTTTGAAACTG    298

BSNT_05580___    296 ATGCCGCAAAAGAAGAGAAAGAAGCAGCACTCGTTACCTATAATAACACG    345
                     |.||..|.|||||||||||||||||||||||.||.|.|||||||||||||
BL04028___spo    299 ACGCAACTAAAGAAGAGAAAGAAGCAGCACTTGTAAACTATAATAACACG    348

BSNT_05580___    346 TACAGCCTAAGCAAAGGAATTGACTTAGCTGAGAAAGACGG-AAAAGATT    394
                     ||||||.|.||||||||.||.|||||.|||||||||||||| ||||.|||
BL04028___spo    349 TACAGCATGAGCAAAGGTATCGACTTGGCTGAGAAAGACGGAAAAACATT    398

BSNT_05580___    395 TCGATGTCTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGAAAAAGAT    444
                     | |||||.||.||.|||||.|||||||||||..|.|||||||.||||||.
BL04028___spo    399 T-GATGTTTCCGCATCTCTAAGCGGTACGGTCATCAAAGCTGCAAAAGAC    447

BSNT_05580___    445 CCAGTGCTGGGATATGTTGTGGAAGTAGAACATGCCGACGGTTTATCGAC    494
                     ||.||.|||||.||.|||||.|||||.|||||||..||.||||||||.||
BL04028___spo    448 CCTGTACTGGGCTACGTTGTTGAAGTTGAACATGAAGATGGTTTATCAAC    497

BSNT_05580___    495 TGTGTATCAATCTCTTTCCGAAGTAAGCGTTGAGCAAGGTGACAAAGTAA    544
                     |||||||||.||||||||.|||||||||||..|.|||||||||||..|..
BL04028___spo    498 TGTGTATCAGTCTCTTTCTGAAGTAAGCGTCAAACAAGGTGACAAGATTG    547

BSNT_05580___    545 AACAAAATCAAGTGATCGGAAAATCTGGCAAGAACCTTTACAGTGAAGAC    594
                     |||||||||||||.|||||||||.|.|||||.||||||||||.||||||.
BL04028___spo    548 AACAAAATCAAGTCATCGGAAAAGCAGGCAAAAACCTTTACAATGAAGAA    597

BSNT_05580___    595 AGCGGAAACCACGTACACTTTGAAATCCGTAAAGATGGGGTCGCAATGAA    644
                     .||||||||||.||.||.|||||||||||.|||||.||.||.||..|.||
BL04028___spo    598 GGCGGAAACCATGTGCATTTTGAAATCCGCAAAGACGGTGTTGCGCTAAA    647

BSNT_05580___    645 TCCGTTAAACTTTATGGACAAACCAGTTTCTTCTATTGAAAAAGC-----    689
                     .|||.|.|||||.||||||||.||.||.||....|||||||||||     
BL04028___spo    648 CCCGCTGAACTTCATGGACAAGCCGGTCTCCAGCATTGAAAAAGCAATGG    697

BSNT_05580___    690 ----AGCAGCTGCTGAAG---AAAAAGCTGC-CACCC-------------    718
                         |..|||..||||||   ||.||.|||| ||.||             
BL04028___spo    698 AGGAACAAGCGTCTGAAGTGAAAGAACCTGCTCAGCCTTCTGTTGAAGAA    747

BSNT_05580___    719 AAG----AAACAGAAGAATCAATTCAGCAATCTTCCGAGAAAAAGGACGG    764
                     |||    ||||||||||  |||   |||          ||||       |
BL04028___spo    748 AAGTCAAAAACAGAAGA--CAA---AGC----------GAAA-------G    775

BSNT_05580___    765 ATCAACTGA-AAAAGGAACAGAAGAAAAATCCGGTGAGAAAAAGGATGAT    813
                     |||||   | |.|.||||.|||.||.|||.||      ||...|||.|||
BL04028___spo    776 ATCAA---ACAGATGGAAAAGACGACAAAACC------AAGCGGGAAGAT    816

BSNT_05580___    814 TCAACTGACAAATCTGGTTCCAAAGAAAGCAGCACAACAGAAGACA--CT    861
                     ||..||||      .||.||   |||||  |.||..||.|||..||  ||
BL04028___spo    817 TCGTCTGA------AGGGTC---AGAAA--ATCAAGACGGAACCCAGTCT    855

BSNT_05580___    862 GA---------ACAGTCTTAA    873
                     ||         .|||||.|||
BL04028___spo    856 GACGATTCAAGCCAGTCATAA    876


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