Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05654 and BL04032
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:46
# Commandline: needle
# -asequence dna-align/BSNT_05654___racA.1.5803.seq
# -bsequence dna-align/BL04032___racA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05654___racA-BL04032___racA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05654___racA-BL04032___racA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05654___racA
# 2: BL04032___racA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity: 361/657 (54.9%)
# Similarity: 361/657 (54.9%)
# Gaps: 198/657 (30.1%)
# Score: 950.0
#
#
#=======================================
BSNT_05654___ 1 ATGAATACAAATATG-----GTAGCAAGTGAACTCGGCGTCTCCGCAAAA 45
|||||||| || |..||||.||||||.||.||.||..|.|||
BL04032___rac 1 ATGAATAC-----TGCTGATGCGGCAAATGAACTGGGGGTTTCAACCAAA 45
BSNT_05654___ 46 ACGGTGCAGCGGTGGGTGAAGCAGCTGAATCTTCCGG----CCGAACGCA 91
|||||||||||.|||||.|||||||||.|.||.||.| |||| |
BL04032___rac 46 ACGGTGCAGCGTTGGGTCAAGCAGCTGCAACTGCCCGCTTCCCGA----A 91
BSNT_05654___ 92 ATGAGCTCGGACACTATTCGTTCACGGCAGAAGACGT------------- 128
|||||||.||.|||||.|..|||||||.|||.||..|
BL04032___rac 92 ATGAGCTTGGCCACTACTTTTTCACGGAAGACGATATCGCCATTTTAAAA 141
BSNT_05654___ 129 GAAGGTTCTAAA--ATCCGTTCAAAAACAAATCTCTGAAGGCACGGCGAT 176
|||| |||| |.|.|||.|||||| ||.|||.|.||
BL04032___rac 142 GAAG----TAAAAGAGCAGTTGAAAAAC-----------GGTACGCCTAT 176
BSNT_05654___ 177 TCAGGATATTCATCTGCCG---AAAAGCGCTAAAAAGCGCACAGGCTTCC 223
.|||||| .||| || |||.||.|.||||| |..||||.
BL04032___rac 177 GCAGGAT-GTCA-----CGGTCAAACGCCCGAAAAA------AACCTTCT 214
BSNT_05654___ 224 TTGTCCA-AAAAAC-AAGTAGCGACACAGAACGAA--------------- 256
|..||.| |||||| ||.| ||..|| ||||||
BL04032___rac 215 TCATCAAGAAAAACGAAAT---GATTCA-AACGAAAGAGCCTGCACTGCA 260
BSNT_05654___ 257 ---GAATCGAGCAGCTTGAACAAAAGCTGGACACC--CTTTTACAGCA-- 299
|||| ||||.|||.|||.|||.|||| ||.| .|||||.||||
BL04032___rac 261 ATTGAAT-GAGCGGCTCGAAGAAAGGCTG--CAGCGTTTTTTAGAGCATG 307
BSNT_05654___ 300 AAGGCAGGACGAAAGCGAATTGATGGC---AAGGATGTCG--GAACTGGA 344
|| |||...|||.||||..||.| | |||.|..||| ||.|||||
BL04032___rac 308 AA--CAGCTTGAACGCGAGCTGCT--CCAAAAGAAAATCGCCGAGCTGGA 353
BSNT_05654___ 345 ACGCCAGCTGAAACAAAAAGCCGATGAAGGT-GTATCTTACCAGCTGCTT 393
|.|..|||||.|.||||||||.||.| |||| ||.||.||||||||.||.
BL04032___rac 354 AAGAAAGCTGGAGCAAAAAGCGGACG-AGGTCGTCTCCTACCAGCTTCTG 402
BSNT_05654___ 394 CAGCACCGCAGAGAAATCGATGATATTCTTGCAGATCTGCA----ATCAA 439
|||||..|..|.|||.|.||.|| |||.|.||| |||||
BL04032___rac 403 CAGCAAAGGCGCGAACTTGAAGA---------AGAACGGCAGCAGATCAA 443
BSNT_05654___ 440 TGACCTC------ACAAAT----------GAAAGAATTCACCGC------ 467
..|.||| | |||| |||||.||..|||||
BL04032___rac 444 GCATCTCGAGCAGA-AAATCAGCCAATTGGAAAGCATGAACCGCCGGGAA 492
BSNT_05654___ 468 ------TCAGCCGATCCCCGAGACTGCTGCTGCTTCTG----------AA 501
.|||||| ||.| ||
BL04032___rac 493 AAAGATACAGCCG---------------------TCAGAAGAGAAGAAAA 521
BSNT_05654___ 502 AAAACCAAAACGAGAAAA---AAACCGCTGCTGTCACTGTTCAAATTTCA 548
||||||.|| |||.||| |||.||.| || ||.||.||.||
BL04032___rac 522 AAAACCGAA--GAGCAAATTGAAATCGAT-CT-TCTCTTTTTAA------ 561
BSNT_05654___ 549 AACCTAA 555
BL04032___rac 561 ------- 561
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