Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01794 and BL04034

See Amino acid alignment / Visit BSNT_01794 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_01794___yhjM.1.5803.seq
#    -bsequence dna-align/BL04034___ntdR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01794___yhjM-BL04034___ntdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01794___yhjM-BL04034___ntdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01794___yhjM
# 2: BL04034___ntdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1073
# Identity:     666/1073 (62.1%)
# Similarity:   666/1073 (62.1%)
# Gaps:         166/1073 (15.5%)
# Score: 1732.0
# 
#
#=======================================

BSNT_01794___      1 ATGCCTACAATTGATGAAATAGCAAAATTATGCAATGTGTCTAAAACCAC     50
                     ||||||||.|||||.|||||.|||||||||.|.||||||||.|||||.||
BL04034___ntd      1 ATGCCTACGATTGACGAAATTGCAAAATTAAGTAATGTGTCAAAAACAAC     50

BSNT_01794___     51 AGTGTCAAGAGTATTGAATAATCATCCGTATGTGTCGAAAGAAAAAAGAG    100
                     .||.|||||||||.||||..|||||||.|||||.||..||||||||||..
BL04034___ntd     51 TGTTTCAAGAGTACTGAACGATCATCCCTATGTATCTGAAGAAAAAAGGA    100

BSNT_01794___    101 ATATGATCTTAAAGGCAATTAACG---AACTTGACTACACTCCCAATTA-    146
                     |...|.|.||   ||.|.|.|.||   ||.|.||||||| ||||.|..| 
BL04034___ntd    101 AGCGGGTTTT---GGAAGTCATCGAAAAATTGGACTACA-TCCCGAACAC    146

BSNT_01794___    147 -TTTAGCTCGGAATTTTAGGAGAAATAAGACACAAACGATAGCTTTATCG    195
                      |.| ||.||.||..|.||     ||...||| |||||||  .|||.|||
BL04034___ntd    147 GTCT-GCACGAAAGCTCAG-----ATCCAACA-AAACGAT--GTTTCTCG    187

BSNT_01794___    196 GTTCCGAGTATC-------------GACCATCCATTTTTTGCTCAATTAA    232
                          .|||.||             |||||.||.||.||.|||||..|.|
BL04034___ntd    188 -----CAGTGTCTGTCCCACACGCGGACCACCCCTTCTTCGCTCAGCTTA    232

BSNT_01794___    233 TAAAAGGGGTCTCTC--ATGAAGCACTGTTTAAGA--ATTACAAGGTAAT    278
                     |.||  |..|.|.||  .||||||.|||  .||.|  |.|||||.||.||
BL04034___ntd    233 TGAA--GCATATGTCCGCTGAAGCGCTG--AAACACCAATACAAAGTCAT    278

BSNT_01794___    279 TGTATTTCAGACCTTTTATGACAAACAGACAGAGCTAGAATTATTAGAGT    328
                     |||.||||||||.||||||.|.||.||||..||.||..||.||.|.|||.
BL04034___ntd    279 TGTGTTTCAGACGTTTTATCAAAAGCAGAATGAACTGAAAGTACTGGAGC    328

BSNT_01794___    329 TATTGAAACATAAAGAAGTGGATGGTATTATTCT-TGGAACTTTAGAAAA    377
                     |..|.||....||||||||.||.||..||||.|| ||.|.|.|| |||||
BL04034___ntd    329 TGCTCAAGAGGAAAGAAGTCGACGGCGTTATGCTATGCAGCCTT-GAAAA    377

BSNT_01794___    378 TGAATGGGATCAGATATCCCCT------TTCTTAAAGTATGGTCCTATC-    420
                     |||||||||  |||.|||          |.|.|.||.||.|||||   | 
BL04034___ntd    378 TGAATGGGA--AGACATC----AAAAAATACGTCAAATACGGTCC---CG    418

BSNT_01794___    421 TTATTATG--TAATGAATATCATCACTC---AGCGGACATCACGATAATT    465
                     |..|||||  .||||||| ||  |||.|   |||||||.|..||.|.||.
BL04034___ntd    419 TGGTTATGGCAAATGAAT-TC--CACGCCGAAGCGGACGTGCCGGTGATC    465

BSNT_01794___    466 GGGTATGATGAATTTGAAGCTACATACATGGG---GGTAGTACATTTAAT    512
                     .|.|||||.|||||.|||||...|||.|..||   || ||  |.|||.||
BL04034___ntd    466 TGCTATGACGAATTCGAAGCCGGATATAAAGGAACGG-AG--CTTTTTAT    512

BSNT_01794___    513 TGAAAGAGGGCATAAAAAAATTGGGTTTTGTTTTGATACTCCATATAGCG    562
                     |.|||.|||||||.|...|||.|..|||||.|.|||.||...|.|.|||.
BL04034___ntd    513 TCAAAAAGGGCATCATTTAATGGCCTTTTGCTGTGACACGATACACAGCA    562

BSNT_01794___    563 AAGCTCA-ATGTCAGAGGAAAG-AGGGTTATTTGAAAGCTT-------TA    603
                     |.||.|| || |..|||.|||| |||||| |.|||||||.|       |.
BL04034___ntd    563 AGGCCCAGAT-TATGAGAAAAGAAGGGTT-TATGAAAGCATTGTCTGATG    610

BSNT_01794___    604 CAAGATTACGATTTACATCATAGAAGCGAATGGATATTCGGCGAAATGTT    653
                     ||.|.||.|| |||.||  ..|||||    |||||.|||.||.|....||
BL04034___ntd    611 CAGGTTTGCG-TTTCCA--GGAGAAG----TGGATGTTCAGCCACGCATT    653

BSNT_01794___    654 TAATATCGAGGATGGCTTTCGTGTTTTTCATAAGAT--AAAGGATCT---    698
                     ||..||..|.||.|||||.||..||.|..|..||||  |.|..||.|   
BL04034___ntd    654 TACCATTCATGACGGCTTCCGCATTATGGACCAGATCCACAACATGTCCG    703

BSNT_01794___    699 -AAAGGACAGACCCTCAGCAATATTTACAGGAAATGATCAAGTCGCCGCA    747
                      ||||  |.||||    ||.||.|||||.|||||.||.|||||.||||||
BL04034___ntd    704 AAAAG--CCGACC----GCCATTTTTACGGGAAACGACCAAGTGGCCGCA    747

BSNT_01794___    748 GGGATTATTAAACAGG---CGATGA-----AAAATGGCTTTAAAGTTCCA    789
                     ||.||||||||| |||   |||| |     ||.|||      ||||.|||
BL04034___ntd    748 GGAATTATTAAA-AGGGCCCGAT-ATTATCAATATG------AAGTGCCA    789

BSNT_01794___    790 GAAG--ACTTAGCTGTAATTGGTTTTGACAACCAATTGATCTGCCAAGT-    836
                      |||  .||| ||.||..||||.|.||||||.||||.||||||..|.|| 
BL04034___ntd    790 -AAGCAGCTT-GCAGTGCTTGGATATGACAATCAATCGATCTGTGAGGTG    837

BSNT_01794___    837 --CGTTACTCCGACCATAACAACAATTGATATCCCCGTAATAGAATTAGG    884
                       ||   .||||...||.||.|||||.|||||.||.||...|||..|.|.
BL04034___ntd    838 ACCG---ATCCGGAAATCACGACAATCGATATACCTGTTGAAGAGCTGGC    884

BSNT_01794___    885 TCAACAGGC----TGTG---TTGAAAATCATC-GAGTCCATTTCGGGTAA    926
                     ||||.|.||    ||||   |.|.|||.|.|| ||.|       |||.||
BL04034___ntd    885 TCAAAAAGCCGTATGTGCAATGGTAAACCTTCTGAAT-------GGGGAA    927

BSNT_01794___    927 TGCCACTTTAAACAGAAGAA--TTATTAAACTGCCAAC-------AAAGC    967
                     .||..|||   |||||.|.|  |..|.|.||||.|..|       |||  
BL04034___ntd    928 AGCGGCTT---ACAGAGGGATGTCGTGACACTGTCCCCTGCATTAAAA--    972

BSNT_01794___    968 TTATTATAAGAGAATCAACGTAA    990
                          ||||||.||||....||.
BL04034___ntd    973 -----ATAAGACAATCTGTTTAG    990


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