Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00056 and BL05001

See Amino acid alignment / Visit BSNT_00056 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:42
# Commandline: needle
#    -asequence dna-align/BSNT_00056___csfB.1.5803.seq
#    -bsequence dna-align/BL05001___csfB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00056___csfB-BL05001___csfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00056___csfB-BL05001___csfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00056___csfB
# 2: BL05001___csfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 206
# Identity:     145/206 (70.4%)
# Similarity:   145/206 (70.4%)
# Gaps:          25/206 (12.1%)
# Score: 483.0
# 
#
#=======================================

BSNT_00056___      1 ATGGACGAAACAGTTAAACT-TAATCAT------ACATGTGTGATTTGTG     43
                     |||        |||  ||.| |||||||      ||.|||.|.|||||.|
BL05001___csf      1 ATG--------AGT--AAGTCTAATCATGGGGAAACGTGTATCATTTGCG     40

BSNT_00056___     44 ATCAAGAGAAGAATAG-AGGCATTCATCTTTATACGAAATTCATATGCTT     92
                     |..||.|.|| ||..| |||.||||||||||||||||||||..||||.|.
BL05001___csf     41 AGGAAAATAA-AACCGAAGGAATTCATCTTTATACGAAATTTTTATGTTC     89

BSNT_00056___     93 AGATTGTGAGAGAAAAGTAATT---TCTACATCAACTTCTGATCCTGACT    139
                     .|||||||||| |||||  |||   |||||||||||.||.||.||.||.|
BL05001___csf     90 GGATTGTGAGA-AAAAG--ATTGTATCTACATCAACATCAGACCCCGAAT    136

BSNT_00056___    140 ATGCGTTTTACGTAAAAAAACTAAAGAGCATTCATACACCGCCATTATAT    189
                     |..|...|||.||.||||||.|||||||..|.|.|||.||||||||||||
BL05001___csf    137 ACTCTGATTATGTCAAAAAATTAAAGAGTCTCCGTACGCCGCCATTATAT    186

BSNT_00056___    190 TCATAG    195
                     ||.|||
BL05001___csf    187 TCTTAG    192


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