Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00062 and BL05002
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:43
# Commandline: needle
# -asequence dna-align/BSNT_00062___yaaR.1.5803.seq
# -bsequence dna-align/BL05002___yaaR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00062___yaaR-BL05002___yaaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00062___yaaR-BL05002___yaaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00062___yaaR
# 2: BL05002___yaaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity: 311/463 (67.2%)
# Similarity: 311/463 (67.2%)
# Gaps: 44/463 ( 9.5%)
# Score: 977.5
#
#
#=======================================
BSNT_00062___ 1 GTGAAAATTAATAAAGATATACGTACATTTATAGATAATAAGCAGATTCC 50
.|||||||.|.|.||||..|.||||||.|.|||||.||..||||||.|||
BL05002___yaa 1 ATGAAAATAAGTCAAGAACTGCGTACAATGATAGAGAAACAGCAGACTCC 50
BSNT_00062___ 51 CTCT-------GTGAAAACATCTGAGATCACGGCATCGTTTAA----AAC 89
..|| |.|||||..|.| |.||.||.||||| ||.
BL05002___yaa 51 GCCTGCAAGAGGAGAAAATGTTT-------CTGCTTCATTTAAAGAGAAG 93
BSNT_00062___ 90 ATCAATGGAAAACCAAAGCAGCAAAATGAAGC------TTGATCAGCTTA 133
||.||| |..||||||.|| |||| ||||.|||||.|
BL05002___yaa 94 ATGAAT----ATACAAAGCGGC------AAGCTTCGAGTTGAACAGCTGA 133
BSNT_00062___ 134 CCAGGCTGTTATCTGATATAGAAGCATTCGGAAAAAGGCTAACGAAATCT 183
|.|.|||.|||.|.|||||.|||||.|||||||||.|.||..|.|||||.
BL05002___yaa 134 CAATGCTTTTAACAGATATTGAAGCGTTCGGAAAACGCCTCTCAAAATCG 183
BSNT_00062___ 184 CGGAATTTTAAAGACTTAGCGAGATTTAAAGGACTTG-TGAAACGTTTTG 232
.|.||.||.|||||.||.||.||.||.||||| |||| |.|||||.||||
BL05002___yaa 184 AGAAACTTCAAAGATTTGGCCAGGTTCAAAGG-CTTGATCAAACGATTTG 232
BSNT_00062___ 233 TCAAAGAAGCTGTGGACAGCGGCCTTTCACATGAAACATCGAAAAGCTTT 282
|.|||||..|.||.||.|.|||.||..|....||.|..||.|.||||||.
BL05002___yaa 233 TAAAAGAGACCGTTGAAAACGGTCTGACGGTGGAGAATTCAAGAAGCTTC 282
BSNT_00062___ 283 GACCTTTACGGGAACAGCAGAACGCTGGGACTTGTGAAAGAAATAGATGA 332
||.||.|||||.||||||.|.||..|..|..|||||||||||.|.||.||
BL05002___yaa 283 GATCTGTACGGAAACAGCCGGACATTAAGCATTGTGAAAGAACTGGACGA 332
BSNT_00062___ 333 CAAA--TTGATACAGCTTACGGAAGAGATGATGGATCAGGAAAAACCGGC 380
||| ||| |.||..|.||.||.||..|.||||||||.||||||.|..|
BL05002___yaa 333 -AAAGCTTG-TGCAATTAACTGAGGATCTTATGGATCAAGAAAAATCCTC 380
BSNT_00062___ 381 AATTGA--TTTGCTGGAGCGTATTGGCGAAATAAAAGGTTTATTAATTAA 428
.||.|| ||| ||||.||.||||||||||||||.||||||.|.||.||
BL05002___yaa 381 TATCGAACTTT--TGGAACGCATTGGCGAAATAAAGGGTTTACTGATAAA 428
BSNT_00062___ 429 CCTTTACACATAG 441
|||||||||||||
BL05002___yaa 429 CCTTTACACATAG 441
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