Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00815 and BL05043
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00815___ydcK.1.5803.seq
# -bsequence dna-align/BL05043___ydcK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00815___ydcK-BL05043___ydcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00815___ydcK-BL05043___ydcK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00815___ydcK
# 2: BL05043___ydcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 495
# Identity: 316/495 (63.8%)
# Similarity: 316/495 (63.8%)
# Gaps: 75/495 (15.2%)
# Score: 980.0
#
#
#=======================================
BSNT_00815___ 1 ATGGAT-AATATAGAGCTTCAAAAGCTGACAGAGGATATTTCTAAAACAT 49
|||||| ||.| |.|.||.||..||||||||||..|..||||....||||
BL05043___ydc 1 ATGGATGAACA-ACAACTGCAGCAGCTGACAGAACAGCTTTCGCTCACAT 49
BSNT_00815___ 50 ATTTTAAAAAGCCGTTCCGCCATCAGGCGCTT--TTTAATGACAGGCTTA 97
|.||||||||.||||||||.||.| |||||| ||.||...|.|.||.|
BL05043___ydc 50 ACTTTAAAAAACCGTTCCGGCACC--GCGCTTACTTCAACAGCCGCCTGA 97
BSNT_00815___ 98 AAACCACGGGCGGAAGGTACCTGTTAACCTCTCATAACATTGAATTGAAC 147
||||.||.||.||.|||||..||.|.|..||.||.||.||.||..||||.
BL05043___ydc 98 AAACGACAGGAGGCAGGTATTTGCTGAATTCCCACAATATCGAGCTGAAT 147
BSNT_00815___ 148 AGAAAATATCTGATTGAACAC-GGCAGGGAGGAACTGATC-----GGCAT 191
|.||||||.||||..|||||| |||| ||..||.| |||||
BL05043___ydc 148 AAAAAATACCTGACAGAACACGGGCA------AAAAGAGCTTGAAGGCAT 191
BSNT_00815___ 192 CATCAAGCACGAGCTCTGCCATTATCATCTTCACCTTGAAGGAAAAGGGT 241
|||||||||.||..|.||||||||.||.||.||.||||||||||||||.|
BL05043___ydc 192 CATCAAGCATGAATTGTGCCATTACCACCTCCATCTTGAAGGAAAAGGCT 241
BSNT_00815___ 242 ACAAGCACAGAGACAGAGATTTTAGAATGCTTTTGCAGCAAGTCAACGCG 291
||||||||.|.||||..||||||||||.|||.||..||.|||||...|||
BL05043___ydc 242 ACAAGCACCGCGACAAGGATTTTAGAACGCTATTAAAGGAAGTCGGTGCG 291
BSNT_00815___ 292 CCGAGGTTCTGTACACCCCT----TAAGA-AAAAAGCGGAAAACAAAAAA 336
|||.|||||||.||.||.|| .|||| |||||||.|.|||.||||..
BL05043___ydc 292 CCGCGGTTCTGCACGCCGCTCGAAAAAGAGAAAAAGCCGCAAAGAAAAGT 341
BSNT_00815___ 337 ACTTATATGTATATCTGTACGGCCTGCGGCCAACAGTATAT---AAAG-- 381
||..|.| ||.|..|||...||.|||||.|||..||.|.| ||||
BL05043___ydc 342 ACGCACA--TACAAGTGTGAAGCATGCGGACAAACGTTTCTCCGAAAGCG 389
BSNT_00815___ 382 --AAGCGCGCCATGAACCCTGACAGATACAGG----------TGCGGAAA 419
|| ||| ||||||.| |||||.||
BL05043___ydc 390 GAAA-------ATG----------GATACAAGCCGTTACGTTTGCGGCAA 422
BSNT_00815___ 420 ATGCCGCGGAAAAATAAAAAGAATTTTTTCGTAA----------- 453
.|||.|.||.|||||||||..|| ||.|||
BL05043___ydc 423 GTGCGGAGGGAAAATAAAAGAAA-----TCATAAAAAAGGGTTGA 462
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