Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01505 and BL05083

See Amino acid alignment / Visit BSNT_01505 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_01505___ssuD.1.5803.seq
#    -bsequence dna-align/BL05083___ssuD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01505___ssuD-BL05083___ssuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01505___ssuD-BL05083___ssuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01505___ssuD
# 2: BL05083___ssuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1163
# Identity:     836/1163 (71.9%)
# Similarity:   836/1163 (71.9%)
# Gaps:          64/1163 ( 5.5%)
# Score: 2843.5
# 
#
#=======================================

BSNT_01505___      1 ATGGAAATTCTTTGGTTTATACCGACTCATGGAGACGCGA-GATATTTAG     49
                     .||||.|||.|.||||||||.|||||||||||.|||| || |.|||.|.|
BL05083___ssu      1 TTGGACATTTTATGGTTTATTCCGACTCATGGCGACG-GACGTTATCTTG     49

BSNT_01505___     50 GATCTGAAA---GTGATGGACGGACTGCGGATCATCTTTACTTTAAACAA     96
                     |..|  |||   |.|| |||.|..|.||.|||||....||||||.|.||.
BL05083___ssu     50 GTAC--AAACACGGGA-GGAAGAGCCGCAGATCACACCTACTTTCAGCAG     96

BSNT_01505___     97 GTCGCGCAGGCGGCAGACAGGCTGGGATATACAGGAGTTCTTCTGCCGAC    146
                     ||.|||||||||||.||||||||.||.||||||||.||||||||.|||||
BL05083___ssu     97 GTGGCGCAGGCGGCTGACAGGCTTGGGTATACAGGGGTTCTTCTTCCGAC    146

BSNT_01505___    147 GGGAAGATCGTGCGAGGACCCGTGGCTTACAGCGTCGGCACTGGCAGGAG    196
                     |||||||||||||||.|||||||||.||||.||..|.||.|||||...||
BL05083___ssu    147 GGGAAGATCGTGCGAAGACCCGTGGATTACCGCAGCCGCTCTGGCGTCAG    196

BSNT_01505___    197 AAACAAAGGACTTAAAGTTTTTAGTCGCGGTAAGACCTGGTTTAATGCAG    246
                     ..||.||..|..|.||||||||.|||||.||||||||.|||||.||||||
BL05083___ssu    197 TCACGAAAAATCTGAAGTTTTTGGTCGCTGTAAGACCCGGTTTGATGCAG    246

BSNT_01505___    247 CCTTCTCTGGCAGCCAGAATGACGTCCACTCTAGACCGCATTTCAGACGG    296
                     ||.||..|.||.||..|.|||.|.||.||..|.||.||..||.||||.||
BL05083___ssu    247 CCGTCGGTTGCGGCGCGGATGGCTTCGACATTCGATCGTCTTGCAGAGGG    296

BSNT_01505___    297 CCGGCTGCTGATCAACGTTGTGGCTGGGGGCGATCCGTATGAGCTGGCAG    346
                     |.||||.||.|||||.||.||.||.||.||.|||||||||||..|.||.|
BL05083___ssu    297 CAGGCTTCTCATCAATGTGGTCGCCGGCGGTGATCCGTATGAATTAGCCG    346

BSNT_01505___    347 GCGATGGCCTGTTTATCAGCCATGATGAGCGCTACGAGGCAACAGACGAA    396
                     ||||.|||||||||||||||||||||||.||.||.||.||.|||.|.||.
BL05083___ssu    347 GCGACGGCCTGTTTATCAGCCATGATGAACGGTATGAAGCGACAAATGAG    396

BSNT_01505___    397 TTTTTAACCGTTTGGCGGAGACTTTTGCAGGGAGAAACGGTTTCCTA-TG    445
                     |||.|...|.|.||||||...|||||..|.||.||.||.||...||| |.
BL05083___ssu    397 TTTCTCGACATATGGCGGTCGCTTTTAAAAGGCGAGACCGTCAGCTACTC    446

BSNT_01505___    446 AAGGAAAGCATAT-AAAAGTGGAAAAC-AGCAATCTACTTTTCCCG-CCG    492
                     |.||||| ||..| ||.|.| |||||| .||..| |.||||||||| |||
BL05083___ssu    447 AGGGAAA-CACCTGAAGACT-GAAAACGGGCGCT-TGCTTTTCCCGCCCG    493

BSNT_01505___    493 CAGCAAGAGCCGCATCCGCCCATCTATTTCGGTGGTTCGTCACAGGCTGG    542
                     | .|||.||||.||||||||.||||||||.||.||.||||||.||||.||
BL05083___ssu    494 C-CCAACAGCCTCATCCGCCAATCTATTTTGGCGGCTCGTCAAAGGCCGG    542

BSNT_01505___    543 GATTGAAGCTGCCGCAAAGCATACAGACGTGTACTTGACATGGGGTGAGC    592
                     |...||..|||||||.||.||..|.|||||.||.|||||||||||.||||
BL05083___ssu    543 GCAGGAGACTGCCGCCAAACACGCGGACGTCTATTTGACATGGGGAGAGC    592

BSNT_01505___    593 CGCCTGAACAAGTAAAAGAAAAAATAGAAAGAGTCAAAAAGCAAGCGGCA    642
                     |||||.|.|..||.|||||||||||..||...|||||||||.|.||.|.|
BL05083___ssu    593 CGCCTCATCTCGTCAAAGAAAAAATCCAATCTGTCAAAAAGAAGGCTGAA    642

BSNT_01505___    643 AAAGAAGGGAGATCCGTTCGATTTGGCATTAGGCTGCATGTCATTGCCCG    692
                     ||||||||||||.||||.||.|||||.||.||||||||.||.||.|.|.|
BL05083___ssu    643 AAAGAAGGGAGAACCGTCCGTTTTGGAATCAGGCTGCACGTGATCGTCAG    692

BSNT_01505___    693 TGAAACTGAACAAGAGGCATGGGAAGCGGCAGAGCGCTTGATCAGCCACT    742
                     .|||||.|||.|||||||.|||.|.|||||.||..|..|||||||||.||
BL05083___ssu    693 GGAAACGGAAAAAGAGGCCTGGCAGGCGGCGGATAGACTGATCAGCCGCT    742

BSNT_01505___    743 TGGATGATGACACCATTGCCAAAGCGCAGGCTGCTTTGAGCCGTTACGAC    792
                     ||||.|||||.||.||||||..|||.||....||..|||..||....||.
BL05083___ssu    743 TGGAGGATGAAACGATTGCCGCAGCCCAAAACGCGATGAAACGGATGGAT    792

BSNT_01505___    793 TCTTCAGGCCAGCAGCGGATGGCCGTC--CTTCATCAAGGAGATCGGACG    840
                     ||.|||||.||..||.||||||  .||  |||||.||.||| |.|.||.|
BL05083___ssu    793 TCATCAGGACAAAAGAGGATGG--TTCAGCTTCACCAGGGA-AACAGAAG    839

BSNT_01505___    841 -AAGCTTGAAATCAGCCCGAATCTGTGGGCGGGGATCGGTCTGGTCAGAG    889
                      ||.|||||.||||||||||||||.||||||||||||||.||||||||||
BL05083___ssu    840 CAATCTTGAGATCAGCCCGAATCTTTGGGCGGGGATCGGACTGGTCAGAG    889

BSNT_01505___    890 GAGGGGCAGGAACAGCCCTTGTCGGTGATCCGCAGACGATTGCTAACCGG    939
                     |.||.||.||||||||.||.||||||||||||.|.|||.|.||.|.|||.
BL05083___ssu    890 GCGGAGCGGGAACAGCGCTCGTCGGTGATCCGGAAACGGTAGCCAGCCGA    939

BSNT_01505___    940 ATAGCGGAGTAC-CAGGCACTCGGCATAGAATCGTTTATATTCTCAGGCT    988
                     |||...||.||| |.|.|| |||||||.||.||.|||||.||||||||.|
BL05083___ssu    940 ATAAAAGAATACGCCGACA-TCGGCATTGAGTCCTTTATCTTCTCAGGTT    988

BSNT_01505___    989 ATCCGCATTTAGAAGAAGCGTATTATTTTGCAGAGCTTGTATTTCCGCTT   1038
                     ||||.|||.|.|||||||||||..||||||||||....||.||||||||.
BL05083___ssu    989 ATCCACATCTTGAAGAAGCGTACCATTTTGCAGAAAAGGTTTTTCCGCTC   1038

BSNT_01505___   1039 TTGCCGTTTGAAAATGATCGGACGAGAAAGCTTCAGAACAAAAG----GG   1084
                     .|.|||||         |||.|||   ||.||||| ||..||||    .|
BL05083___ssu   1039 CTTCCGTT---------TCGAACG---AAACTTCA-AAGTAAAGCATCAG   1075

BSNT_01505___   1085 GAGAAGCGGTAGGAAA-CACTTATTTT-------GTCAAAGAGAAAAATG   1126
                     |.||||...|.||||| .|| .|||||       |.||||.|||||||  
BL05083___ssu   1076 GCGAAGTCATCGGAAATGAC-CATTTTCCGTCGAGGCAAAAAGAAAAA--   1122

BSNT_01505___   1127 CATGA--------   1131
                         |        
BL05083___ssu   1123 ----ACCGTTTAA   1131


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