Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01171 and BL05097

See Amino acid alignment / Visit BSNT_01171 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01171___cotJA.1.5803.seq
#    -bsequence dna-align/BL05097___cotJA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01171___cotJA-BL05097___cotJA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01171___cotJA-BL05097___cotJA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01171___cotJA
# 2: BL05097___cotJA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 269
# Identity:     168/269 (62.5%)
# Similarity:   168/269 (62.5%)
# Gaps:          55/269 (20.4%)
# Score: 500.5
# 
#
#=======================================

BSNT_01171___      1 ATG---------AAGGATATGCAGCCGTTTTCGCC--TGTCAAATCATAT     39
                     |||         ||||| || ||      |||.||  .||||||||.|||
BL05097___cot      1 ATGAAACATCCCAAGGA-AT-CA------TTCACCAAAGTCAAATCGTAT     42

BSNT_01171___     40 ACGCCC-TTTCACAGCCGTTTTGATCCCTGTCCGCCCATAGGGAAGAAAT     88
                      ||||| |||||||||...||||||||.||||||||.||.||.||.|.||
BL05097___cot     43 -CGCCCGTTTCACAGCGCCTTTGATCCGTGTCCGCCGATCGGCAAAAGAT     91

BSNT_01171___     89 ATTACAGAACGCCCCCTAACCTTTATATGACCTTTCAGCCTGAGCACATG    138
                     |.||||||||.||.||.||.||.|||.|....|||||||     |.|..|
BL05097___cot     92 ACTACAGAACCCCTCCAAATCTATATCTAGGTTTTCAGC-----CCCGCG    136

BSNT_01171___    139 G-----AGCAGTTTTCGCCGATGGAGGCTTTGAGGAAAGGCACCCTTTGG    183
                     |     .|||||||||.|||||||||||..||...|||||.||.||||||
BL05097___cot    137 GCCTTCCGCAGTTTTCCCCGATGGAGGCGCTGCAAAAAGGGACGCTTTGG    186

BSNT_01171___    184 -AAGGATCTCTATGATTTTTATGAAAACCCTTATCGAGG--GGGAGACGC    230
                      ..|.|| |.||.|||..|||||||||.||.||| ||.|  ||||     
BL05097___cot    187 CCCGTAT-TTTACGATCATTATGAAAATCCGTAT-GAAGATGGGA-----    229

BSNT_01171___    231 ACATGGCAAAAAAGGTTGA    249
                         ||.||          
BL05097___cot    230 ----GGTAA----------    234


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