Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01944 and BL05112

See Amino acid alignment / Visit BSNT_01944 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_01944___prpE.1.5803.seq
#    -bsequence dna-align/BL05112___yjbP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01944___prpE-BL05112___yjbP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01944___prpE-BL05112___yjbP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01944___prpE
# 2: BL05112___yjbP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 770
# Identity:     529/770 (68.7%)
# Similarity:   529/770 (68.7%)
# Gaps:          64/770 ( 8.3%)
# Score: 1667.5
# 
#
#=======================================

BSNT_01944___      1 ATGGCTTACGATATCATCAGCGATATTCATGGCTGCTATGATGAAATGAC     50
                     |||...||||||.|.|||.|.||||||||.||.||||||||.|||||||.
BL05112___yjb      1 ATGAAATACGATGTTATCGGTGATATTCACGGGTGCTATGACGAAATGAT     50

BSNT_01944___     51 TGCATTAATCCAAAAGCTTGGCTA------TACAATCAAAAATGGAGTAC     94
                     |||..|.||..||||.||.|||||      .|| ||||     |||||.|
BL05112___yjb     51 TGCGCTGATTGAAAAACTCGGCTACTCGCTGAC-ATCA-----GGAGTTC     94

BSNT_01944___     95 CTGTCCAT--GAAGAAGGCAGGGTGCTTGTTTTTGCCGGAGATTTAACTG    142
                     |.||.|||  |.||||  |||....|||||.|||..|||.||||||||||
BL05112___yjb     95 CCGTTCATCCGGAGAA--CAGAACACTTGTCTTTCTCGGGGATTTAACTG    142

BSNT_01944___    143 ACAGAGGGCCCAAATCGATAGAGGTCATCCGATTTGTAG--CCGGCGCTT    190
                     ||||||||||.||||||.|.||||||.|...||||||||  |.|||..||
BL05112___yjb    143 ACAGAGGGCCAAAATCGCTGGAGGTCGTTGAATTTGTAGGACGGGCCGTT    192

BSNT_01944___    191 ACGAAAAAGGCGCTGTGCGTTATGTCCCGGGAAACCATTGCAATAAATTA    240
                       |||.|.||.||||||||.|||||.||.||.||.||||||||.||..|.
BL05112___yjb    193 --GAAGATGGAGCTGTGCGATATGTGCCCGGCAATCATTGCAACAAGCTG    240

BSNT_01944___    241 TATCGTTACTTAAAAGGAAATCCGGTAAAAGTGATGCATGGTCTCGAAAC    290
                     ||.||||..||.||.|||||||||||.||..||..|||.||.||.|||||
BL05112___yjb    241 TACCGTTTTTTCAAGGGAAATCCGGTGAAGCTGCAGCACGGACTGGAAAC    290

BSNT_01944___    291 AACAGCGGCAGAGCTTGAGGAACTTTCCAAAGATGAGAAAAAATCAG---    337
                     .||.|||||.|| .|..||.|||.||||      ||.|.||||.|||   
BL05112___yjb    291 GACGGCGGCCGA-ATACAGAAACCTTCC------GAAACAAAAACAGAAG    333

BSNT_01944___    338 ----TCAGCGAACAGTTTATGAAGCTGTACGAAACAGCGCCGCTTTACGA    383
                         ||||.||.|..||.|||...||.|||||||..||.|||||||||||
BL05112___yjb    334 GATATCAGAGACCTTTTCATGCGCCTTTACGAAAAGGCTCCGCTTTACGA    383

BSNT_01944___    384 CATCTTACATAATGGAGAATTAGTTGTCGCCCATGCTGGCATAAGAGCTG    433
                     .|||.|.|||||.||.|||.|.||.||.||.|||||.|||||.|.|||.|
BL05112___yjb    384 GATCCTGCATAACGGCGAACTTGTCGTTGCACATGCCGGCATCAAAGCGG    433

BSNT_01944___    434 ACGATATCGGCAAATA---TACCCGCAGAGTGAAGGACTTTGTGCTTTAC    480
                     |.||.|||||||||.|   |..|.|.|.|||.||..|.||||||||.|||
BL05112___yjb    434 AAGACATCGGCAAAAAGCCTGTCGGAAAAGTAAAACAGTTTGTGCTCTAC    483

BSNT_01944___    481 GGTGACGTGACGGGTGAAACATATCCGGACGGCAGACCCGTCAGACGTGA    530
                     ||.||..|.||.||.|||||....||.|||||..|.||.||.|||||.||
BL05112___yjb    484 GGAGATATTACAGGGGAAACGCTGCCAGACGGACGGCCAGTGAGACGGGA    533

BSNT_01944___    531 TTGGGCGGCAGCCT-ATAAC---GGAAAGGCTTGGGTGGTATACGGTCAT    576
                     .|||||.|    || ||.||   ||..||.|.|||||.||||||||.|||
BL05112___yjb    534 CTGGGCCG----CTCATTACAGAGGCGAGCCGTGGGTTGTATACGGCCAT    579

BSNT_01944___    577 ACACCTGTGAAAGAACCTCGA--AAGGTCAATCGCACCATCAACATTGAT    624
                     ||.||.||.||| |||| |||  |.|.|..|||..||.||.||.||.|||
BL05112___yjb    580 ACTCCCGTCAAA-AACC-CGAGGATGATTCATCATACAATTAATATCGAT    627

BSNT_01944___    625 ACAGGCTGCGTGTTCGGAAATCA-ACTGACAGGCTTTC-GCTTTCCAGAA    672
                     ||.||.||.||.|||||.|| || .||||| .|||||| |.||.||.|||
BL05112___yjb    628 ACCGGTTGTGTATTCGGCAA-CAGGCTGAC-CGCTTTCAGATTCCCGGAA    675

BSNT_01944___    673 ATAGA-AACCGTCTCTGTTCCAAGCTCCTTGCCTTACGACGAATCAAGAT    721
                     .| || |||||..||||||||...|||.||||||||.||.||.||.||||
BL05112___yjb    676 CT-GACAACCGAATCTGTTCCCTCCTCTTTGCCTTATGATGAGTCTAGAT    724

BSNT_01944___    722 TTCGCCCCAT------ATAA    735
                     |   ||.|||      ||||
BL05112___yjb    725 T---CCGCATGGAGCCATAA    741


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01944 and BL05112

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
