Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04757 and BL05135
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:58
# Commandline: needle
# -asequence dna-align/BSNT_04757.1.5803.seq
# -bsequence dna-align/BL05135.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04757-BL05135.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04757-BL05135.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04757
# 2: BL05135
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 623/1310 (47.6%)
# Similarity: 623/1310 (47.6%)
# Gaps: 514/1310 (39.2%)
# Score: 1059.0
#
#
#=======================================
BSNT_04757 1 ATGGCTAAA------GGA-ACGAAGCGAATACGTGCGCGTTATACTTCAG 43
||| ||.| ||| |||||| || |.|
BL05135 1 ATG--TATATGCGGGGGAGACGAAG------------------AC--CGG 28
BSNT_04757 44 CAACTAAAC-----GAGA-----ACTTCCGAA--TATTAC---GTTTGAC 78
|.|.||||| |||| ||.|.|||| ||..|| ||.|||
BL05135 29 CGATTAAACATAGTGAGAAAAATACATACGAAAGTAAGACTCTGTCTGA- 77
BSNT_04757 79 CGTGCG---ACAGATATTGTTATCTCGGGAAAGAT-TGCGGAGGGCTTAC 124
.|||.| |||.|| ||||.| .|.|||.|| |..|.|||.|||||
BL05135 78 TGTGTGTAAACAAAT-TTGTAA----CGTAAAAATGTCTGAAGGACTTAC 122
BSNT_04757 125 GTGAAAGGACGATAATCGATTACAAAAAGATCGTTA------GATATTTC 168
||||| ||.|.||| |||||.|| |.|.|.|.
BL05135 123 --GAAAG------AAACAATT-------GATCGCTATCGCCGGGTTTGTG 157
BSNT_04757 169 ACGGAGTGGCTAACGCAAAAATACGAAGATAT----GG----------AG 204
|..|.|||| ||.|||.||..||.|| || ||
BL05135 158 AGAGTGTGG-------AAGAATTCGCGGAAATTAAAGGACTGTCCACCAG 200
BSNT_04757 205 TATGTGAA-----CGACGTGACAATCGAGCATTTACG-CGCA-TATAT-- 245
|.| |||| .||.| ||||| |||.|| .||| ||.||
BL05135 201 TGT-TGAATCTATAGATG------TCGAG--TTTGCGAGGCAGTACATGA 241
BSNT_04757 246 -CCAT-TACTTACGCTACGAG-AGAAGGCGCTATGAAGG----CCATACG 288
|.|| |||| || ||||| ||||..|| .|.|||| ||.|
BL05135 242 CCTATATACT---GC-ACGAGAAGAAAACG--TTTAAGGGACACCGT--- 282
BSNT_04757 289 AATATCGATGCGACAAAACAGCCGGTAGGATTATCTGAAACT--ACGGT- 335
||| |||.|||...||..|| ||||| |.|||
BL05135 283 --TAT---------AAACCAGAAAGTGTGA-------AAACTCCAGGGTG 314
BSNT_04757 336 -------AAATATTGCGATTCG--CACGCT------TACG---GCATATT 367
||||| |||.|.| | ||| || ||.| ||| .||
BL05135 315 TTCTCCGAAATA-TGCAAAT-GACCAC-CTGAAAACTATGAGAGCA-GTT 360
BSNT_04757 368 TTAACTATT---TATACGCCGAGGGATTTATCGA--TCCG--AATCCGGT 410
||.||| || |||| .|||.|..||| || ||.| |||||..|
BL05135 361 TTTACT-TTCTGTATA----AAGGAAAATAT-GATTTCGGAAAATCCATT 404
BSNT_04757 411 TGAGCGATTAAAACTGATTAAA------CAGGACGTTGATATGACGAAC- 453
|.| ||||.|.|.|||| || |.|| ||||
BL05135 405 TCA------AAAAATAAATAAAGTCAAGCA-GCCG----------GAACC 437
BSNT_04757 454 ---AATTTCACAAA-------TGAAGAGGTCGCGAGGATACTAGAGCAGC 493
|||| |||| ||.|||| |.||.|| ||||||
BL05135 438 TGTAATT---CAAATATTATCTGTAGAG---GAGATGA------AGCAGC 475
BSNT_04757 494 -----------CGGAGCAACGTGA---TTTTGTCGGGTTTAGAGACTACG 529
|.||..|| |.|| ||.|.| |.|||||||||.||||
BL05135 476 TTTTAAAAACACCGAATAA-GCGAAAGTTCTCT-GAGTTTAGAGATTACG 523
BSNT_04757 530 TAGG-------------AATTAGCCTCTTACTTGATTCCGGTCTAAGAAT 566
| || ||||| |||..|| ||.| |||||
BL05135 524 T-GGTTATGATGTGTTTAATTA-------ACTCTAT----GTGT-AGAAT 560
BSNT_04757 567 AGGCGAACTTGTGGGACTAACCGTAGATGA--GA-----------TTGAC 603
.||.|||.|.| |.||..|||| || || ||||.
BL05135 561 CGGAGAAATCG------TCACTTTAGA-GATCGAAAATATAAATTTTGAG 603
BSNT_04757 604 TTCAGCGCTCCGCAAATAGTCTTAGGCGGCGGTAG-------------AA 640
|| |.|||.| |.||.|||| |.|| ||
BL05135 604 TT--GAGCTAC---ATTATTCTT--------GAAGCTCAAAAAACAAAAA 640
BSNT_04757 641 C---TAAGGGGCGCTATTTTAGAATTGTGCC--TATATCAACATATTGCG 685
| .||.||.|| ||..||| || ||.||.||.|||
BL05135 641 CGAGAAAAGGCCG------TATGATT---CCATTAGATAAAAATA----- 676
BSNT_04757 686 CAA---AGCTTTTGAAGCAGCTCATTG--AAGAGAAT-CGC-------GC 722
||| ||||..|.||..|| |.|||| |||| ||| ||| ||
BL05135 677 CAATGCAGCTGCTTAAAAAG-TTATTGTTAAGA-AATACGCGATTTAAGC 724
BSNT_04757 723 CCACTTCGATACTAACTCGGTTTTTGTATCCAGTCT-------------A 759
| ||..|| |||| |||| |
BL05135 725 C--------TAGCAA----------GTAT---GTCTTCATTACGGAGGAA 753
BSNT_04757 760 GG----AGATCAACTCACGACTAATCATTTTAATAAGCGCCTCAAGTTTT 805
|| |||| |.|||||..|..||||||..||.||.||...|..||
BL05135 754 GGGACAAGAT----TAACGACCGACAATTTTAGAAAACGGCTTGCGGATT 799
BSNT_04757 806 ACG-----CAGAAAGAGCAGGAATAAAGACAAAGAAAGT-CACCGCGCAC 849
||| ||| |||||||||||.| |||| ||| ||.| ||||
BL05135 800 ACGCTCATCAG-----GCAGGAATAAATA-AAAG--AGTCCATC-CGCA- 839
BSNT_04757 850 GTTTA--TAGACATACTTGGGCTAAAATCAT----------------GAT 881
|||| ||||||.||...|||.|..||..| |||
BL05135 840 -TTTATTTAGACACACCGCGGCGAGCATGTTTTTGCAGGCAGGAGGGGAT 888
BSNT_04757 882 CGTAGACA-----AGAAGATAGACATTTACACAGTTCAAAAAATGGGTGG 926
|.|||.|| |||.||| ||| .||
BL05135 889 CTTAGGCACCTCCAGACGAT---CAT---------------------CGG 914
BSNT_04757 927 CTGGAAAGATATAAGAACGCTTCGGA-GGTATGTA---------CAACTT 966
|...||||||.|| ||.| ||||| || ||.||.
BL05135 915 CCATAAAGATTTA---------CGTATGGTAT-TACGATATACTCATCTG 954
BSNT_04757 967 TCGACAGAGGACTTAAGAAGGTCACACGA-TGAAGGTTCGCCGTTAA--- 1012
|||..|||...|.|...||||..||| || ||||..|||||...|||
BL05135 955 TCGTTAGAATCCCTCGCAAGGCAACA-GAGTGAATATTCGCTAATAAACC 1003
BSNT_04757 1013 ---TGGCGATTAG-------AGATAGTCGCAG------AAAAAGAATATA 1046
||| ||| |.|||..|..|| ||||||||.|||
BL05135 1004 AAGTGG----TAGATGGGTTAAATAAGCCAAGGAAGACAAAAAGAAAATA 1049
BSNT_04757 1047 A--------- 1047
.
BL05135 1050 CGGAAGGTAG 1059
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