Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02367 and BL05143
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02367___ykuR.1.5803.seq
# -bsequence dna-align/BL05143___ykuR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02367___ykuR-BL05143___ykuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02367___ykuR-BL05143___ykuR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02367___ykuR
# 2: BL05143___ykuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1179
# Identity: 812/1179 (68.9%)
# Similarity: 812/1179 (68.9%)
# Gaps: 108/1179 ( 9.2%)
# Score: 2723.0
#
#
#=======================================
BSNT_02367___ 1 ATGAA-------GAAAGAGGAGCTCATCGCAATTCGCAGAGATCTGCATC 43
||||| |||..||.| ||.|||||||||||||||||.|
BL05143___yku 1 ATGAAATTGGACGAATTAGCA-------GCGATTCGCAGAGATCTGCACC 43
BSNT_02367___ 44 GTATACCGGAGCTTGGATTTCAGGAGTTCAAAACCCAGCAGTATTTATTA 93
..||.||.||.||.||.||||||||.|..||.||.|||...|||.|.||.
BL05143___yku 44 AAATTCCTGAACTCGGTTTTCAGGAATATAAGACACAGGCTTATCTTTTG 93
BSNT_02367___ 94 CATGTCTTGGAACAATATCCGCAA-GACAGAATTGAAATTGAGAAATGGC 142
.|...|||.|.|.|..|||||.|| ||| |.|||||||||||.||.|||.
BL05143___yku 94 AACCACTTAGCAAAGCATCCGGAAGGAC-GGATTGAAATTGAAAAGTGGA 142
BSNT_02367___ 143 GAACAGGGCTTTTTGTAAAAGTGAACGGGACGGCGCCGGAAAAAATGCTG 192
||||.||.||.||||||||.||.||.||||||||.||.|||||.||..||
BL05143___yku 143 GAACCGGACTGTTTGTAAAGGTTAAAGGGACGGCCCCTGAAAAGATTTTG 192
BSNT_02367___ 193 GCATACAGAGCGGATATCGATGCGCTTTCTAT---AGAAGAGCAAACTGG 239
||.|||||.||||||||.||.|.|||.||||| .|||| |.||.||
BL05143___yku 193 GCGTACAGGGCGGATATGGACGGGCTCTCTATTCGGGAAG---ATACCGG 239
BSNT_02367___ 240 ----------TCTTCCATTCGCATCAGAGCATCACGGCAACATGCACGCC 279
||||||.|| |||||.|.||..|||||.||.
BL05143___yku 240 ATATTCTTTTTCTTCCGTT----------CATCAGGACAGGATGCATGCG 279
BSNT_02367___ 280 TGCGGTCACGATTTGCATATGACAATTGCACTCGGCATTATTGATCATTT 329
|||||.||.|||||.||.|||||.|||||.||||||||.||.||||||||
BL05143___yku 280 TGCGGGCATGATTTCCACATGACGATTGCCCTCGGCATCATCGATCATTT 329
BSNT_02367___ 330 TGTTCACCACCCAGTCAAACATGATTTGCTTTTTCTGTTTCAGCCGGCAG 379
.||.|.||||||.||.|||||.|||.||||.|||.||||.||||||||.|
BL05143___yku 330 CGTCCGCCACCCGGTTAAACAAGATCTGCTGTTTTTGTTCCAGCCGGCTG 379
BSNT_02367___ 380 AGGAAGGGCCTGGCGGTGCGGAACCAATGCTTGAGAGCGATGTATTAAAA 429
|||||||.||.|||||.||.||.||.||||||||.|||||..|.||.|||
BL05143___yku 380 AGGAAGGACCGGGCGGCGCTGAGCCGATGCTTGAAAGCGACTTGTTTAAA 429
BSNT_02367___ 430 AAATGGCAGCC-----TGATTTCATCACTGCCCTTCATATTGCTCCAGAG 474
||.|||.|||| || |||||.||.||.||.||.||.||.||.
BL05143___yku 430 AAGTGGGAGCCGAGCATG-----ATCACAGCGCTGCACATCGCGCCTGAA 474
BSNT_02367___ 475 CTTCCGGTAGGCACCATTGCGACAAAAAGCGGCCTTCTATTTGCGAATAC 524
||.|||||.||.||.||.|..||.||||||||.||.||.|||||.|||||
BL05143___yku 475 CTCCCGGTCGGAACGATCGGAACGAAAAGCGGGCTGCTCTTTGCCAATAC 524
BSNT_02367___ 525 ATCAGAGCTAGTCATCGATCTGGAAGGCAAAGGG-GGACATGCGGCATAT 573
.||.|||||.||.|||||.||.||||| |||||| ||.|||||.||||||
BL05143___yku 525 GTCGGAGCTCGTAATCGAACTTGAAGG-AAAGGGCGGGCATGCCGCATAT 573
BSNT_02367___ 574 CCGCATTTGGCTGAGGATATGGTTGTAGCAGCAAGTACACTTGTCACCCA 623
||.||..|.||.||.||||||||.||.||.||.|||.|.||.||.||.||
BL05143___yku 574 CCCCACCTTGCAGAAGATATGGTGGTCGCGGCCAGTTCGCTCGTTACGCA 623
BSNT_02367___ 624 GCTGCAAACGATTATCTCTAGAAACACAGATCCGCTAGACAGTGCTGTTA 673
..||||..||||..|..|.||.||....||||||||.|||||||||||||
BL05143___yku 624 AATGCAGTCGATCGTAGCCAGGAATGTCGATCCGCTGGACAGTGCTGTTA 673
BSNT_02367___ 674 TTACAGTTGGTACCATTACCGGAGGCTCGGCACAAAATATCATTGC---G 720
||||..|.||.||.|||||.||.||.|||||||||||.|||||.|| |
BL05143___yku 674 TTACCATCGGGACGATTACAGGCGGATCGGCACAAAACATCATCGCTCAG 723
BSNT_02367___ 721 GAA--ACGGCCCACCTGGAAGGCACGATCCGCACGCTTTCTGAAGAATCG 768
||| |.|| ||.|||||.||||||.|.|||||.||...||..||.
BL05143___yku 724 GAAGCAAGG-----CTTGAAGGGACGATCAGGACGCTGTCCCCAGCGTCA 768
BSNT_02367___ 769 ATGAAACAAGTAAAGGAACGGATTGAAG--ATGTAGTGAAAGGAATCGAA 816
|||.||||.||.|||.||.||||.||.| ||| ||....||..|.|||
BL05143___yku 769 ATGGAACAGGTGAAGAAAAGGATCGAGGCCATG--GTTCGGGGCCTGGAA 816
BSNT_02367___ 817 ATCGGATT-CCGCTGCAAAGGAAAAGTGACATATCCGTCTGTCTATCACC 865
| |||.|| .|..||||..||.|||||.|..|||||..|.|..|||.|.|
BL05143___yku 817 A-CGGCTTATCAATGCAGCGGTAAAGTCAGCTATCCTGCAGCATATTATC 865
BSNT_02367___ 866 AAGTTTACAATACGAGCGGATTAACAGAAGAATTTATGTCTTTTGTTGCT 915
|.||.|.||||.|.||||..|||...|||||.||||||...||.|||.||
BL05143___yku 866 AGGTCTGCAATTCAAGCGATTTAGTCGAAGACTTTATGCAGTTCGTTTCT 915
BSNT_02367___ 916 GAACATCAACTGGCGACTGTAATTGAAG------------CAAAAGAAGC 953
||| |||.|.| |||.|| ||||||||||
BL05143___yku 916 GAA----AACGGCC--------TTGCAGAGGTCGTCCGTTCAAAAGAAGC 953
BSNT_02367___ 954 AATGACTGGGGAGGATTTTGGCTATATGCTGAAAAAATATCCCGGCTTCA 1003
.|||||.||||||||.||.|||||||||||||||||.|||||.|||||||
BL05143___yku 954 GATGACAGGGGAGGACTTCGGCTATATGCTGAAAAAGTATCCGGGCTTCA 1003
BSNT_02367___ 1004 TGTTCTGGCTCGGCGCTGATTCTGAAC---ATGGGCTTCATCATGCTAAG 1050
||||.||||||||||..||||| || |.||||||||.||.||.|||
BL05143___yku 1004 TGTTTTGGCTCGGCGTCGATTC---ACCTTACGGGCTTCACCACGCCAAG 1050
BSNT_02367___ 1051 CTGAATCCCGATGAAA----ATGCGATAGAAACAGCGGTTAATGTCATGA 1096
|||.|.|| |||| |.|||.|.|||||.||.||....|||||||
BL05143___yku 1051 CTGCAGCC----GAAAGAGGAAGCGCTTGAAACGGCAGTCCGCGTCATGA 1096
BSNT_02367___ 1097 CAGGTTATTTTTCTGTTTATGCCAATTAA 1125
|.|.||||||.|||....|.||||||||.
BL05143___yku 1097 CGGCTTATTTCTCTTCCAAAGCCAATTAG 1125
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