Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02368 and BL05144

See Amino acid alignment / Visit BSNT_02368 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02368___ykuS.1.5803.seq
#    -bsequence dna-align/BL05144___ykuS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02368___ykuS-BL05144___ykuS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02368___ykuS-BL05144___ykuS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02368___ykuS
# 2: BL05144___ykuS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     187/250 (74.8%)
# Similarity:   187/250 (74.8%)
# Gaps:           8/250 ( 3.2%)
# Score: 654.0
# 
#
#=======================================

BSNT_02368___      1 ATGGCTAAAAAAATAGGAATTGAACAATCATTATCAGATGTAGAAGCTGC     50
                     |||.|.||||||||.|||||.||||||||..|.||.|||||.||.|||||
BL05144___yku      1 ATGTCGAAAAAAATCGGAATCGAACAATCTCTTTCTGATGTCGAGGCTGC     50

BSNT_02368___     51 TTTAAAAGAAAAAGGATATGACGTTGTAATGATGAAAAGCCCTGCTGATG    100
                     |||.||.||||||||.|||||.|||||||.||||||||.|...|..||||
BL05144___yku     51 TTTGAAGGAAAAAGGGTATGAGGTTGTAACGATGAAAACCGAAGACGATG    100

BSNT_02368___    101 CTCAAGGCTGTGACTGCTGTGTCGTAACAGGTCTTGATAATAATGTGCAA    150
                     |..|||||||.||||||||.|||||.||.|||||.||.|.|.||.|||..
BL05144___yku    101 CAAAAGGCTGCGACTGCTGCGTCGTCACTGGTCTGGACACTGATATGCTC    150

BSNT_02368___    151 GGGATAGCCGATACGGTAACACAAGCACCTGTCATTACA-GCTTCCGGGA    199
                     |||||..|.||||||.|.||...||||.|||||| |||| ||..|.||..
BL05144___yku    151 GGGATTTCAGATACGATGACCGGAGCATCTGTCA-TACAGGCGACGGGTT    199

BSNT_02368___    200 TGACGGCTGAAGAAATTTG-CAGCGAAGTTGAAAGCAGAA--TTCAGTAA    246
                     |.||.||.||.|||||.|| |||| |.||||  ||||.||  ||||||||
BL05144___yku    200 TAACTGCCGATGAAATCTGTCAGC-AGGTTG--AGCAAAAACTTCAGTAA    246


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