Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02438 and BL05149

See Amino acid alignment / Visit BSNT_02438 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_02438___yktB.1.5803.seq
#    -bsequence dna-align/BL05149___yktB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02438___yktB-BL05149___yktB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02438___yktB-BL05149___yktB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02438___yktB
# 2: BL05149___yktB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity:     461/679 (67.9%)
# Similarity:   461/679 (67.9%)
# Gaps:          83/679 (12.2%)
# Score: 1514.5
# 
#
#=======================================

BSNT_02438___      1 ATGA-CA--CAAATGCGTTTCACTGAAGAGGACTTTAACACATTTACAAT     47
                     |||| ||  |   |||||||.|||||||||||.|||...|||||||||||
BL05149___ykt      1 ATGAGCAGTC---TGCGTTTTACTGAAGAGGATTTTCGTACATTTACAAT     47

BSNT_02438___     48 AGAAGGCTTAGACGCGCGCATGGAAGTATTAAAAGAGACGGTCCGTCCGA     97
                     ||||||.|||||.|||||.|||...||..|.|||||.||.||.||.||||
BL05149___ykt     48 AGAAGGTTTAGATGCGCGGATGAGCGTTCTGAAAGACACAGTGCGCCCGA     97

BSNT_02438___     98 AGCTTACAGCTCTAGGCGAACATTTTGCCCCAACTTTATCAGCTTTAACC    147
                     |.|||..||..||.|||||.||||||||.||...|.|.||.|||||.||.
BL05149___ykt     98 AACTTCAAGGGCTCGGCGATCATTTTGCGCCTGTTCTGTCCGCTTTGACA    147

BSNT_02438___    148 GGAGATGAAATGTTTCCGCATGTGGCAAAGCATGCAAGAAGATCCGTCAA    197
                     |||||.|||||||||...||.||.||.|||||.||..|..|.||.|||||
BL05149___ykt    148 GGAGACGAAATGTTTGTCCACGTCGCCAAGCACGCGCGCCGCTCAGTCAA    197

BSNT_02438___    198 TCCCCCTGCTGACAGCTGGGTGGCGTTCGCAAACAGCAAAAGAGGCTATA    247
                     |||.||.|..|||||||||||.||.||||||||||..||..|.|||||||
BL05149___ykt    198 TCCGCCGGACGACAGCTGGGTTGCTTTCGCAAACAATAAGCGCGGCTATA    247

BSNT_02438___    248 AAAAACTGCCACATTTCCAAATTGGTTTATGGGAAAGCCACGTCTTTGTG    297
                     ||||.|||||.|||||||||||||||||||||||||.||||||.||.||.
BL05149___ykt    248 AAAAGCTGCCGCATTTCCAAATTGGTTTATGGGAAACCCACGTTTTCGTA    297

BSNT_02438___    298 TGGTTCGCGATT-ATTTATGAATCCCCTATCAAAGAAGAATACGGCAAAT    346
                     |||||.|| ||| ||.|||||.||||||.||||..|.|||||||||.|..
BL05149___ykt    298 TGGTTTGC-ATTGATCTATGAGTCCCCTCTCAAGCAGGAATACGGCCAGC    346

BSNT_02438___    347 TGCTTGAAATGAACCAAGAAACCATTACGAAAAATATCCCTGACA-----    391
                     ||.||          |||||.|           ||.|.||.||.|     
BL05149___ykt    347 TGTTT----------AAGAAGC-----------ATCTGCCGGATATTGAG    375

BSNT_02438___    392 ----------------GCTTCGTTTGGTCTGCAGATCACACAAAACCGG-    424
                                     ||||..|.|||||.||.|||||.||.||||||| 
BL05149___ykt    376 AGCAGCATTCCAAGTCGCTTTTTCTGGTCGGCCGATCATACGAAACCGGA    425

BSNT_02438___    425 ------GAGTACATAAACAGTCTGAAATG---GACAAGGAACAGCTGAAG    465
                           |||       |||||||||.|||   ||.||.||.|.|  |||.
BL05149___ykt    426 TGCCAAGAG-------ACAGTCTGAGATGAATGAAAAAGATCTG--GAAA    466

BSNT_02438___    466 ACACTGTTTGAGCG--TTTGCAGACTGTAAAGAAAGCTG-AGCTGTTATG    512
                     || ||||||||.||  |...|| || ||.||||||||.| ||| |.|.||
BL05149___ykt    467 AC-CTGTTTGAACGGCTCGTCA-AC-GTGAAGAAAGCAGAAGC-GCTTTG    512

BSNT_02438___    513 CGGCATCCAGCTCCAAAAAGAAGAAGTGCTGAATATGAATAACCAGGAAT    562
                     |||.||.|||||....|||||.||.||||||.||||||.|.|..|||..|
BL05149___ykt    513 CGGTATTCAGCTTTCTAAAGACGAGGTGCTGCATATGAGTGAAGAGGCGT    562

BSNT_02438___    563 TCCT-TCAGCG-TATCGACGATGCCTTTAAGCAGCTTGCTTTTCTGTACC    610
                     |.|| ||  || .|||||.|..||.|||.|..||||.||.||.||.||||
BL05149___ykt    563 TTCTATC--CGAAATCGAAGCGGCTTTTGAAAAGCTCGCCTTCCTTTACC    610

BSNT_02438___    611 GCCTCACCCAAAAAGTATCACAAGCATAA    639
                     ||||.||.||.||||||||   .|.||||
BL05149___ykt    611 GCCTGACGCAGAAAGTATC---GGTATAA    636


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