Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02502 and BL05158

See Amino acid alignment / Visit BSNT_02502 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence dna-align/BSNT_02502___ylbQ.1.5803.seq
#    -bsequence dna-align/BL05158___panE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02502___ylbQ-BL05158___panE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02502___ylbQ-BL05158___panE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02502___ylbQ
# 2: BL05158___panE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity:     577/1005 (57.4%)
# Similarity:   577/1005 (57.4%)
# Gaps:         231/1005 (23.0%)
# Score: 1525.5
# 
#
#=======================================

BSNT_02502___      1 ATGAAAATTGGAATTATCGGCGGAGGCTCCGTCGG--TCTTTTATGCGCC     48
                     .|||||||.|||.|.|||||.||||||||.|||||  ||.|||.|  ||.
BL05158___pan      1 GTGAAAATCGGAGTCATCGGAGGAGGCTCGGTCGGCCTCCTTTTT--GCA     48

BSNT_02502___     49 TATTATTTGTCACTTTATCACGACGTGACTGTTGTGACGAGGCGGCAAGA     98
                     ||.|||||.||..|....|||||.||||||||..|..||.||.|..|.||
BL05158___pan     49 TACTATTTTTCGTTCGGCCACGAAGTGACTGTGATTGCGCGGAGAAAGGA     98

BSNT_02502___     99 ACAGGCTGCGGCCATTCGGTCTGAA------GGAATCCGGCTTTATAAAG    142
                     ||||||.|..||.||      ||||      ||||||||.|||..|.|||
BL05158___pan     99 ACAGGCGGAAGCGAT------TGAAGAAAAGGGAATCCGCCTTCTTGAAG    142

BSNT_02502___    143 GCGGGGAGGAATT------------CAGGG------CTGA--TTGCAGTG    172
                     .||||.|.||..|            |||||      ||||  |||     
BL05158___pan    143 ACGGGAAAGAGATGACCGTGAACGCCAGGGGCGTGACTGAACTTG-----    187

BSNT_02502___    173 CGGACACGAGTATCAATTCGGACTTTGACCTGCTTGTCGTAACAGTGAAG    222
                                    ||.||||||..|||||.|||.|.||..|.||.|||
BL05158___pan    188 ---------------ATCCGGACTGCGACCTTCTTTTTGTTGCCGTAAAG    222

BSNT_02502___    223 CAGCATCAGC---------TTCAGTCTGTTTTTTCGTCGCTTGAACGGAT    263
                     .|||||||||         |||.|||||         .|||.||      
BL05158___pan    223 GAGCATCAGCTCGGAGCCGTTCTGTCTG---------AGCTGGA------    257

BSNT_02502___    264 CGGGAAGACGAAT-------ATATTATTTT--TGCAAAACGGCATGGGGC    304
                        |.||.||..|       |.||.||.||  |||||||.||.||||.||
BL05158___pan    258 ---GCAGGCGGCTCCTCTTGACATCATGTTCCTGCAAAATGGAATGGCGC    304

BSNT_02502___    305 ATATCCACGACCTAAAAGACTGGC--ACGTTGGCCATTCCATTTATGTTG    352
                     ||||.|.||..||..||.|.||||  |||  |||||...|||.||| ..|
BL05158___pan    305 ATATTCCCGTGCTTGAAAAATGGCAGACG--GGCCACCGCATCTAT-ACG    351

BSNT_02502___    353 GAATC-GTTGAGCACGGAGCTGTAAGAAAATCGGATACAGCTGTTGAT--    399
                     |.||| ||.||.|||||||||||.||               .||.|||  
BL05158___pan    352 GGATCTGTGGAACACGGAGCTGTCAG---------------GGTGGATGA    386

BSNT_02502___    400 -------------CATACAGGCCTAGGTGCGATAAAATGGAGCGCATTCG    436
                                  ||.||.||...|||.||..|||||||||||||.||| 
BL05158___pan    387 CCGCACATTCCGGCACACGGGAAAAGGGGCCGTAAAATGGAGCGCGTTC-    435

BSNT_02502___    437 ACGATGCTGAAC--CAGACCGGCTGAACA------TCATGTTTC--AGCA    476
                      |||.||..|.|  |.|.|||||||||.|      ||  |.|||  .|||
BL05158___pan    436 -CGAAGCCAATCCGCCGCCCGGCTGAAAAAAGAGCTC--GCTTCGGTGCA    482

BSNT_02502___    477 T-AACCATTCGGATTT------TCCGATTTATTATGAGACGGATTGGTA-    518
                     | ||.|.|||...|||      |||||         ||||    ||||| 
BL05158___pan    483 TGAAGCGTTCCCTTTTATTTGGTCCGA---------AGAC----TGGTAT    519

BSNT_02502___    519 ----CCGTCTGCTGACGGGCAAGCTGATTGTAAATGCGTGTATTAATCCT    564
                         ||.|| ||.||    .||..|||||||.||||||||.||.|||||.
BL05158___pan    520 AAGCCCCTC-GCCGA----AAAATTGATTGTCAATGCGTGCATCAATCCG    564

BSNT_02502___    565 TTAACTGCGTTATTGCAGGTGAAAAATGGAGAACTGC-TGACAACGCCAG    613
                     .|.||.||..|.||||.|||||||||.||.|..|||| |||..| ||| |
BL05158___pan    565 CTGACGGCTCTTTTGCGGGTGAAAAACGGCGCGCTGCTTGAGGA-GCC-G    612

BSNT_02502___    614 CT-TATCTGGCTTTTATGAAGCTGGTATTTCAGGAGGCATGCAGCATTTT    662
                     .| |||..|||.|.|||||||.|.||.|||.|.||.||..||.|.|||||
BL05158___pan    613 ATGTATGGGGCCTATATGAAGTTCGTCTTTGAAGAAGCGAGCCGGATTTT    662

BSNT_02502___    663 AAAACTTGAAAA---CGAAGAAAAGGCTTGGGAGCGGGTTCAGGCCGTTT    709
                     ..||||||||.|   |.|.|.|   ||.|||||.|..||||...||||.|
BL05158___pan    663 GGAACTTGAAGATCGCCAGGCA---GCGTGGGACCATGTTCTTTCCGTCT    709

BSNT_02502___    710 GTGGACAAACGAAAGAG--AATCGTTCATCAATGCTGGTTGACGTCATTG    757
                     |..|.|..|||||| ||  |..|| ||.||||||||.|..||.||     
BL05158___pan    710 GCCGCCGGACGAAA-AGCAACACG-TCCTCAATGCTTGCCGATGT-----    752

BSNT_02502___    758 GAGGCCGGCAG--------ACGGAAGCTGACGCCATTATCGGATACTTAT    799
                        ||.|||||        ||||||||.||.||.||.|||||.||..|..
BL05158___pan    753 ---GCTGGCAGAAAGAAAAACGGAAGCGGATGCGATCATCGGCTATCTGC    799

BSNT_02502___    800 TGAAGGAAGCA----AGTCTTCAAGGTCTTGATGCCGTC---CACCTAGA    842
                     |||||...|||    ||||    |||   .||..|||.|   |||||...
BL05158___pan    800 TGAAGCGGGCAAAAGAGTC----AGG---AGAGCCCGCCCCGCACCTTAC    842

BSNT_02502___    843 GTTTTTATATGGCAGCATCAAAGCATTGGAGCGAAATACAAACAAAGTCT    892
                     .|||||||||.||||||||||.||..|.||         ||||.||    
BL05158___pan    843 CTTTTTATATCGCAGCATCAAGGCGCTTGA---------AAACGAA----    879

BSNT_02502___    893 TTTGA    897
                       |||
BL05158___pan    880 --TGA    882


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