Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02739 and BL05163

See Amino acid alignment / Visit BSNT_02739 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_02739___cinA.1.5803.seq
#    -bsequence dna-align/BL05163___cinA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02739___cinA-BL05163___cinA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02739___cinA-BL05163___cinA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02739___cinA
# 2: BL05163___cinA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1292
# Identity:     922/1292 (71.4%)
# Similarity:   922/1292 (71.4%)
# Gaps:          82/1292 ( 6.3%)
# Score: 3122.5
# 
#
#=======================================

BSNT_02739___      1 ATGGAATTTCCAAA-AAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGC     49
                     || |||.||..||| ||||||.|||||.||.||.|||||.||.|||||.|
BL05163___cin      1 AT-GAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGCTCTGAGCTTC     49

BSNT_02739___     50 TGCTTGGCCAAATCGCCAATACAAATGCTCAATTTATCAGCAAACAGCTC     99
                     ||||.||.|||||||..||||||||||||||.||||||||||..||..|.
BL05163___cin     50 TGCTCGGACAAATCGTTAATACAAATGCTCAGTTTATCAGCAGGCATTTG     99

BSNT_02739___    100 GCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCC    149
                     ||.||||||||..|.|||||.||||||||.||.|||||.|||||.||.||
BL05163___cin    100 GCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCC    149

BSNT_02739___    150 GGAGCGGCTGAAGCAGGTCATCCGCATTGCTGAAG-AACGCTCTGACTTC    198
                     ||||||.||.||.||.|||||.|..|..|| |.|| ||.|.|||||||||
BL05163___cin    150 GGAGCGCCTTAAACAAGTCATTCAGACAGC-GCAGCAAAGGTCTGACTTC    198

BSNT_02739___    199 ATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTGACGAAAGA    248
                     ||.||||||||.|||||.||.|||||.||.|||||.||||||||.|||||
BL05163___cin    199 ATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTGACAAAAGA    248

BSNT_02739___    249 AACGATTGC--AAATACGCTG--GGACGTCCGCTTGTGTTAAATGATGAG    294
                     ||||||.||  ||    |.||  ||.||.||.|||..|.|..|.|||||.
BL05163___cin    249 AACGATCGCCGAA----GTTGTCGGGCGCCCTCTTAAGCTCGACGATGAA    294

BSNT_02739___    295 GCATTCCAATCCATTGAGGACTATTTCAAACGAACAAAACGCAC-----G    339
                     ||.|||.||||.|||.||||.||.||||||     ||||||.||     |
BL05163___cin    295 GCCTTCGAATCGATTCAGGATTACTTCAAA-----AAAACGAACCGGGAG    339

BSNT_02739___    340 ATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGT    389
                     |||||.||.||.|||||.|||||||||||..|..|||||||.||.||.||
BL05163___cin    340 ATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGT    389

BSNT_02739___    390 GCTGGCGAATCACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAAT    439
                     .|||.||||.|.||||||.|||||.|||||||||||....||||||||||
BL05163___cin    390 TCTGCCGAACCGCTTTGGGATGGCTCCGGGAATGCTGCTTGAGCATGAAT    439

BSNT_02739___    440 CGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTGCGTCCAATG    489
                     ||||||.||||||||||||.||.|||||.||||..||..||...||.|||
BL05163___cin    440 CGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTGGAGCCGATG    489

BSNT_02739___    490 TTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGA    539
                     |||||||||||.||.|||||.||..|..||.|||||.|.||.||.|..||
BL05163___cin    490 TTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAGGGA    539

BSNT_02739___    540 AAAAATTGTGTCAACCGTTCTTCGCTTTTTCGGTATCGGTGAATCTCAGC    589
                     |||.||.|||||||..||.||.|||||.|||||.|||||||||||.||||
BL05163___cin    540 AAAGATCGTGTCAAGGGTGCTGCGCTTCTTCGGCATCGGTGAATCCCAGC    589

BSNT_02739___    590 TTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATT    639
                     |||||.||||||||||||||.|.||.||||||||.||.|||||||||||.
BL05163___cin    590 TTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATC    639

BSNT_02739___    640 GCGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACA    689
                     ||.||..|.|||||.||.||.||.||.|||||..|.||.||.||.||.||
BL05163___cin    640 GCTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTTACGGCAAAGCA    689

BSNT_02739___    690 CGCCGATGAAAAGGAAACAGAGCGTCTGTTAAAAGAAACAG-AGGCCGTT    738
                     .||.|||....||||.|||.|.||..|||||||||||||.| ||.||| .
BL05163___cin    690 TGCGGATCCGGAGGAGACAAACCGCTTGTTAAAAGAAACGGAAGACCG-C    738

BSNT_02739___    739 ATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCT    788
                     ||.||.|||||.|||||.|||||.||.||.||.||.||||||||.||.||
BL05163___cin    739 ATTTTGGAGCGGGTCGGAGAATTCTTTTACGGGTATGATGATACATCCCT    788

BSNT_02739___    789 TGTAAAAGAGCTATCTATAGCGTGCAAGGA-AAAAGGCATTACAATTTCT    837
                     .|.|.|||||||..|.|.|||.||| .||| .||.||.||.||..|..||
BL05163___cin    789 CGCAGAAGAGCTTGCGAAAGCATGC-CGGAGCAAGGGTATGACTCTGGCT    837

BSNT_02739___    838 GCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGACGGATCA    887
                     ||.||.|||||||||||.||.|||||.|||||....||||||||||| .|
BL05163___cin    838 GCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGACGGA-AA    886

BSNT_02739___    888 T-AGCGGTGCCTCAAAATTATTTGCC---GGGGGCGTTGTTTGCTATACA    933
                     | |||||.||.||..|| |||||  |   ||.||||..||.|||||.|||
BL05163___cin    887 TGAGCGGCGCTTCCGAA-TATTT--CAAAGGCGGCGCCGTCTGCTACACA    933

BSNT_02739___    934 AACGACGTGAAGCAGAATGT-----GCTTG-GTGTCAAGAAGGAAACATT    977
                     |||||..||||    |.|||     ||..| ||.||  |.|.||.||..|
BL05163___cin    934 AACGAATTGAA----AGTGTCAGCGGCCGGCGTTTC--GGAAGACACGCT    977

BSNT_02739___    978 AGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGC-----   1022
                     ..|.||.|.|||.|||||||||..|.|.|||||....||.||.||     
BL05163___cin    978 GCAGCGCTATGGTGCGGTCAGCGCGCAATGCGCTAAAGAGCTCGCCGCAG   1027

BSNT_02739___   1023 ---TAAGGGTGTTCAAAAACTCACTGGCAGCGATATCGGCATCAGCTTTA   1069
                        |.||.|   ||||     .||.||.||||||||||||||||||||.|
BL05163___cin   1028 GCATCAGAG---TCAA-----GACAGGAAGCGATATCGGCATCAGCTTCA   1069

BSNT_02739___   1070 CTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTG   1119
                     ||||.|||||.||.||..||.|.||||||||.|||..|.||||..|.|||
BL05163___cin   1070 CTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCTGGAAAGGTG   1119

BSNT_02739___   1120 TTTATCGGCATTTCCGCAAATGG-------TAAAGAAGAGGTTCACGAGT   1162
                     |||||||||||.||||..|| ||       |.|.||||.|.|   |||.|
BL05163___cin   1120 TTTATCGGCATCTCCGTGAA-GGACCAGGCTGAGGAAGCGTT---CGAAT   1165

BSNT_02739___   1163 TTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGCGGCGCTAAATAC   1212
                     ||||.||.||.||.|||||..|.|.|.|..|.||.||....||.||||||
BL05163___cin   1166 TTCAGTTCGCCGGATCCAGGTCTGCGGTGCGGAAGCGTTCTGCCAAATAC   1215

BSNT_02739___   1213 GGCTGCCATTTAAT-CTTAAA--GCTTTTAGAGCAAAAATAA   1251
                     |||||||||.|..| ||.|||  |.|      |.||||||||
BL05163___cin   1216 GGCTGCCATCTGTTGCTGAAAATGAT------GGAAAAATAA   1251


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