Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02740 and BL05164

See Amino acid alignment / Visit BSNT_02740 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_02740___recA.1.5803.seq
#    -bsequence dna-align/BL05164___recA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02740___recA-BL05164___recA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02740___recA-BL05164___recA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02740___recA
# 2: BL05164___recA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1060
# Identity:     859/1060 (81.0%)
# Similarity:   859/1060 (81.0%)
# Gaps:          26/1060 ( 2.5%)
# Score: 3537.5
# 
#
#=======================================

BSNT_02740___      1 ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAA     50
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
BL05164___rec      1 ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAA     50

BSNT_02740___     51 ACAGTTCGGCAAAGGTTCCATTATGAAACTGGGAGAAAAGACAGATACAA    100
                     .|||||.||.||||||||.|||||||||||.||.|||.|.||.||.||.|
BL05164___rec     51 GCAGTTTGGTAAAGGTTCGATTATGAAACTCGGCGAACAAACTGAAACGA    100

BSNT_02740___    101 GAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGA    150
                     |||||||.||.||.||.|||||.||..|.||.||.|||.|.||.||.|||
BL05164___rec    101 GAATTTCAACAGTTCCGAGCGGTTCTTTAGCGCTCGATGCGGCTCTTGGA    150

BSNT_02740___    151 ATTGGCGGATATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAG    200
                     .|.||||||||.||.|||||.||||||||||||||||||||.||||||||
BL05164___rec    151 GTGGGCGGATACCCGCGCGGCCGGATTATTGAAGTATACGGGCCTGAAAG    200

BSNT_02740___    201 CTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAAGTTCAGCAGC    250
                     |||.||||||||.||.||||||||||||||||||||.|||||||||||||
BL05164___rec    201 CTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAAGTTCAGCAGC    250

BSNT_02740___    251 AGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTA    300
                     |||||||||||||.|||||.|||||.||.||.||.|||.|.|||||.||.
BL05164___rec    251 AGGGCGGACAAGCGGCGTTCATCGACGCCGAACACGCGCTTGATCCCGTC    300

BSNT_02740___    301 TACGCGCAAAAGCTCGGTGTTAACATCGAGGAGCTTTTACTGTCTCAGCC    350
                     ||.||.||||||||.||.||.|||||.||.||||||||.|||||.|||||
BL05164___rec    301 TATGCACAAAAGCTGGGCGTCAACATTGATGAGCTTTTGCTGTCACAGCC    350

BSNT_02740___    351 TGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG    400
                     |||.||.||||||||||||||.|||||.||.|||||..|.||..||||||
BL05164___rec    351 TGATACGGGCGAGCAGGCGCTCGAAATCGCTGAAGCCCTTGTCAGAAGCG    400

BSNT_02740___    401 GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAA    450
                     |.||.||.||.||.||.||..|||||||||||||.||.||.||.||||||
BL05164___rec    401 GAGCGGTGGATATCGTTGTCATCGACTCTGTAGCAGCGCTTGTGCCGAAA    450

BSNT_02740___    451 GCGGAAATTGAAGGCGACATGGGAGATTCTCATGTCGGTTTACAAGCACG    500
                     ||.|||||.|||||.||.|||||.|||||.||.||||||||.||.||..|
BL05164___rec    451 GCTGAAATCGAAGGAGATATGGGGGATTCCCACGTCGGTTTGCAGGCCAG    500

BSNT_02740___    501 CTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGA    550
                     ..|.||||||||.||||||||.||||||||.||.||.||.||.|||||||
BL05164___rec    501 ACTGATGTCTCAGGCGCTTCGCAAGCTTTCCGGAGCGATCAATAAATCGA    550

BSNT_02740___    551 AGACAATCGCGATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATG    600
                     ||||.||||||||.||.||.|||||.|||||||||||||||||.||.|||
BL05164___rec    551 AGACCATCGCGATCTTTATCAACCAGATTCGTGAAAAAGTCGGTGTCATG    600

BSNT_02740___    601 TTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGAAATTCTACTC    650
                     ||.||.||.||.||.||.||.||.|||||..|.|||.|||||||||||||
BL05164___rec    601 TTTGGAAATCCTGAGACGACGCCAGGCGGAAGAGCGCTGAAATTCTACTC    650

BSNT_02740___    651 TTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACG    700
                     |||.||.||.||||||||||||||.||.||.|||||||||||||||||||
BL05164___rec    651 TTCTGTCCGCCTTGAAGTGCGCCGCGCAGAGCAGCTGAAACAAGGCAACG    700

BSNT_02740___    701 ACGTAATGGGGAACAAAACGAAAATCAAAGTCGTGAAAAACAAGGTGGCT    750
                     ||||.|||||||||||.||||||||||||||||||||||||||.|||||.
BL05164___rec    701 ACGTCATGGGGAACAAGACGAAAATCAAAGTCGTGAAAAACAAAGTGGCA    750

BSNT_02740___    751 CCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC    800
                     ||.||.|||||.||||||||.||.||||||||||||||.|||||.|||||
BL05164___rec    751 CCTCCATTCCGGACAGCCGAAGTGGACATTATGTACGGGGAAGGAATTTC    800

BSNT_02740___    801 AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAA    850
                     |||||||||.||||||||.||.||.|||||.||.|||||.|||||.||||
BL05164___rec    801 AAAAGAAGGGGAAATCATCGACCTCGGAACAGAGCTTGACATCGTTCAAA    850

BSNT_02740___    851 AAAGCGGTTCATGGTACTCTTATGAAGAAGAGCGTCTTGGCCAAGGCCGT    900
                     |.||||||.||||||||||||||.|.||.||.||.|||||.|||||||||
BL05164___rec    851 AGAGCGGTGCATGGTACTCTTATCAGGAGGAACGCCTTGGACAAGGCCGT    900

BSNT_02740___    901 GAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGAT    950
                     |||||.||.|||||.||||||||||||||.||.||||||.|..|||||||
BL05164___rec    901 GAAAACGCCAAACAGTTCCTGAAAGAAAACAAGGATATCCTTTTGATGAT    950

BSNT_02740___    951 CCAGGAGCAAATTCGCGAACATTACGGCTTGGATAATAACGGAG------    994
                     .||.|||||.||.||.||.||.|||||.|||||||.|   ||||      
BL05164___rec    951 TCAAGAGCAGATCCGGGAGCACTACGGTTTGGATACT---GGAGGCGCTG    997

BSNT_02740___    995 -TAGTGCAGCAGCAAGCTGAAGAGACACAA------GAAGAACTCGAATT   1037
                      |..|||| |||.||   ||.|||.|.|||      |||||||||||.||
BL05164___rec    998 CTCCTGCA-CAGGAA---GACGAGGCCCAAGCTCAGGAAGAACTCGAGTT   1043

BSNT_02740___   1038 TGAAGAATAA   1047
                     |.||      
BL05164___rec   1044 TTAA------   1047


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