Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02789 and BL05175

See Amino acid alignment / Visit BSNT_02789 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:33
# Commandline: needle
#    -asequence dna-align/BSNT_02789___hfq.1.5803.seq
#    -bsequence dna-align/BL05175___hfq.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02789___hfq-BL05175___hfq.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02789___hfq-BL05175___hfq.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02789___hfq
# 2: BL05175___hfq
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 222
# Identity:     188/222 (84.7%)
# Similarity:   188/222 (84.7%)
# Gaps:           0/222 ( 0.0%)
# Score: 804.0
# 
#
#=======================================

BSNT_02789___      1 ATGAAACCGATTAATATTCAGGATCAGTTTTTGAATCAAATCCGGAAAGA     50
                     ||||||.||||.||||||||.|||||||||||||||||.||.||||||||
BL05175___hfq      1 ATGAAATCGATAAATATTCAAGATCAGTTTTTGAATCAGATTCGGAAAGA     50

BSNT_02789___     51 AAATACGTATGTCACTGTTTTTTTGCTGAACGGCTTTCAGTTGCGGGGCC    100
                     ||||||.|.||||||.||.|||||.|||||.||.||||||.||||.||.|
BL05175___hfq     51 AAATACATTTGTCACGGTCTTTTTACTGAATGGATTTCAGCTGCGCGGAC    100

BSNT_02789___    101 AGGTGAAAGGCTTTGATAACTTTACCGTATTGTTGGAATCGGAAGGTAAG    150
                     |.||.|||||.|||||.||||||||.||.|||.|.|||||||||||.|||
BL05175___hfq    101 AAGTAAAAGGATTTGACAACTTTACAGTGTTGATTGAATCGGAAGGAAAG    150

BSNT_02789___    151 CAGCAGCTTATATATAAACATGCGATCTCAACGTTTGCGCCGCAAAAAAA    200
                     ||||||||.|||||.|||||.||.||.||.||||||||.|||||||||||
BL05175___hfq    151 CAGCAGCTCATATACAAACACGCCATTTCTACGTTTGCACCGCAAAAAAA    200

BSNT_02789___    201 CGTCCAGCTTGAACTCGAATAG    222
                     |||.|||||.|||||.||||||
BL05175___hfq    201 CGTTCAGCTCGAACTGGAATAG    222


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