Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01251 and BL05203
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01251___yfnA.1.5803.seq
# -bsequence dna-align/BL05203.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01251___yfnA-BL05203.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01251___yfnA-BL05203.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01251___yfnA
# 2: BL05203
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1704
# Identity: 779/1704 (45.7%)
# Similarity: 779/1704 (45.7%)
# Gaps: 684/1704 (40.1%)
# Score: 1383.0
#
#
#=======================================
BSNT_01251___ 1 ATGAGTTCATTATTTAGAAAAAAACCGCTTGAAACATTGAGTGCGCAGAG 50
|.|||||| .||||| |||||
BL05203 1 --------------TTGAAAAA-------CGAAAC------TGCGC---- 19
BSNT_01251___ 51 CAAGTCAAA--AAGCCTT-------GCCCGTACGT--TAAGCGCATTTGA 89
|.||| ||||||| |||||..||| |.|.||...|||.
BL05203 20 ----TTAAACGAAGCCTTACACTCGGCCCGCTCGTTGTGATCGGCCTTGC 65
BSNT_01251___ 90 TT-TA---ACCTTGCTCG--GTATCGGTTGTGTCAT-CGGTACAGGGATT 132
|| || ||| .||||| |||| |||..||.| ||| ||
BL05203 66 TTATATGGACC-CGCTCGTCGTAT---TTGATTCCTACGG---AG----- 103
BSNT_01251___ 133 TTTGTCATTACAGGAACAG-TGGC--AGCGACCGGTGCAGG--------- 170
||||| |.|||| ||.| ||.|||..||.|.||
BL05203 104 -TTGTC-------GCACAGCTGACAAAGGGACACGTTCCGGCGGCATACG 145
BSNT_01251___ 171 ----------TCCCGCCCTCATCATATCGTTTATTTTAGCGGGGCTCGCC 210
|.||||||||.| |||.|.|| |
BL05203 146 TATTCACTGTTGCCGCCCTCCT-----------TTTGACCG--------C 176
BSNT_01251___ 211 TGTGCGCT--GGCTGCTTTCTGTTATG--CTGAGTTTTCGTCTTCCATTC 256
|.||.||| |||.|| ||| |..||.||.| |
BL05203 177 TTTGAGCTACGGCAGC--------ATGGTCAAAGCTTAC----------C 208
BSNT_01251___ 257 CGATTTCGGGAAGCGTGTACTCCTACT----CATACGTGA---CACTTGG 299
|.|...|||||...||.|| |||| |||| ||| ||.|
BL05203 209 CTAAAGCGGGATCGGTTTA----TACTTATGCATA--TGAAAGCATT--- 249
BSNT_01251___ 300 AGAGCTGCTCGC---CTTTTTGATCGGATGG--GATCTCATGCTTGAATA 344
.|.|.||..|| .|||||...|||.||| || |||||||.||.||
BL05203 250 -CATCCGCATGCGGGATTTTTAGCCGGCTGGACGA--TCATGCTGGACTA 296
BSNT_01251___ 345 TGTCATTGCACTGTCGGCGGTTGCCACCGGCTGGTCTTCATACTTT-CAA 393
|.|..|| ||||| |.||||| .||||| |.|
BL05203 297 TTTGTTT-------------TTGCC----GATGGTC----AACTTTGCGA 325
BSNT_01251___ 394 TCACTGCTTGCCG-GCTTCAATCTTCATATTCCGGCTGCACTGACAGGAG 442
|| .||.| |||| ||.|..||||.||..|..|||.||
BL05203 326 TC------GGCAGCGCTT--------ATTTAACGGCGGCTTTTCCAGAAG 361
BSNT_01251___ 443 CGCCGGGAAGCACGGCGGGCGCCGTATTTAACCTTCCGGCTGCGGTGATC 492
.||| |||.| ||.||| .|.||
BL05203 362 TGCC-----GCATG---------GTTTTT----------------GGGTC 381
BSNT_01251___ 493 ATTCTCCT---------CATCACTG-CG--ATTGT------CAGCAGA-- 522
.||||.|| |||||||| || |.||| ||.||||
BL05203 382 GTTCTGCTCGCTCTATCCATCACTGTCGTCAATGTTTTAGGCATCAGACT 431
BSNT_01251___ 523 GGCGTCAAGGAAAGCACA-----------CGCTTTAACAACGTCATCGTA 561
..||.||| |.|..||| |||||| .||| ||.||||
BL05203 432 AACGGCAA--ATATTACAGGGCTGTTCGTCGCTTT-TCAA-GTGATCG-- 475
BSNT_01251___ 562 CTGATGAAAATCGCGATCAT-ATTATTG-----TTCATTAT--------- 596
|||| |.| |.|.||| ||.||.||
BL05203 476 ----------TCGC---CCTGACTTTTGCCGGATTTATGATCGCCGGGCT 512
BSNT_01251___ 597 ---TGTCGGCATCGGCTATGTGAAACCGGATAACTGGTC---TCCTTTTA 640
.|.||||.|||| .|.|.|..|.|.|||..||| | |||.|||
BL05203 513 GGCAGGCGGCCTCGG-GACGGGCGAGCTGATTTCTG--CCGATCCGTTT- 558
BSNT_01251___ 641 TGCCTTTCGGGATGAAAGGCGTCATAC--------------TTAGCGCCG 676
|.||.||| |||.| ||..|| |.||.| |
BL05203 559 TTCCATTC----TGATA----TCGAACCTTCCCTGATTGTGTCAGGG--G 598
BSNT_01251___ 677 CCAC-----TGTATTCTTCGCGTACCTTGGGTTTGACGCGGTTTCTAACG 721
|.|| |||.||.|| |||..||.||.|||||.|||.|.||||...
BL05203 599 CGACGATTTTGTGTTTTT--CGTTTCTCGGTTTTGATGCGATCTCTACAA 646
BSNT_01251___ 722 CGTCAGAGGAAGTGAAAAATCCGCAAAAAAACATGCCCGTCGGCATTATT 771
.|||.||.|||..|...||.|||.|.|||||||| .||||
BL05203 647 TGTCTGAAGAAACGGTCAACCCGAAGAAAAACAT-TCCGT---------- 685
BSNT_01251___ 772 TCAGCTCTAGCCGTCTGCACGGTTCT----GTA--CATC-GCGGTATCGC 814
|||||.||| |||| ||| .||| |||| |.|||
BL05203 686 -------TAGCCATCT------TTCTAACAGTAGCGATCGGCGG-AACGC 721
BSNT_01251___ 815 TTGTGCTGACAGGCATGATGCCTTATGCCAAATTGAATGTCGGAGATCCT 864
||.|.|| ||| |||..||||| ||| |||..|.|.|||
BL05203 722 ---TGTTCAC-GGC--GATTTCTTAT------TTG-ATGCAGCAAATC-- 756
BSNT_01251___ 865 GTATCCTTTGCTCTG--AAATTCGTCGGACAGGACGCT-----GTTGCCG 907
||||| .|.||.|| ||.||| ||| ||.|.||.| .|.||.|
BL05203 757 -TATCC-GTCCTATGATAACTTC--CGG-CATGCCGATTCGGCATCGCTG 801
BSNT_01251___ 908 GAATTATTTCTGT---CGG--TGCGATTAT-------------------C 933
|||.||...||.| ||| .|||.||.| |
BL05203 802 GAAATAGCCCTATATACGGGAGGCGCTTTTTTAAAGTCCTTCTTTCTGGC 851
BSNT_01251___ 934 GGGATTACGACGG-----------TGATGCTCGCTTTGCTGTACGCTCA- 971
|||| ||||.|| |.||.|||||| ||.|.|| ||
BL05203 852 GGGA--ACGATGGTCGCAGTCATTTCATCCTCGCT---CTCTTCG--CAT 894
BSNT_01251___ 972 ------GGTTCG-----TTTGACATTTGCCATGAGCAGAGACGGCCTTCT 1010
|.|||| |||| |.|||.|||.|..|.|||.||..|||
BL05203 895 GCGAGCGCTTCGCGGCTTTTG---TATGCAATGGGGCGTGACAGCTCTCT 941
BSNT_01251___ 1011 GCCTGGA-----TTGTTCGCAAAGGTTCATCCGTCATTTAAA-ACCCCG- 1053
.|| || ||.||||...|.||.||||||.| |||||| ||.|||
BL05203 942 TCC--GAAACGCTTTTTCGGCTACGTGCATCCGAC-TTTAAAGACGCCGG 988
BSNT_01251___ 1054 ---TTCCGCAACA-------CAT--GGCTGA-------------CAGGGA 1078
|| ||.| ||| |||||| || .||
BL05203 989 TATTT----AATATTTTGTTCATCGGGCTGATTTCTTTGACGGCCA-TGA 1033
BSNT_01251___ 1079 TCGTTGCAGCGGGAATCGCCGG------CTTTATTAACC----TCGGAAC 1118
||| ||||||....|| .||.|||.|.| ||||..|
BL05203 1034 TCG-------GGGAATTAGAGGTCATCTATTCATTCATCAGTTTCGGCGC 1076
BSNT_01251___ 1119 GCTG---------------GCCCATCTG---GTGA------------ACA 1138
|||| |.||||.|| ||.| |||
BL05203 1077 GCTGATCGGATTTATTTTTGTCCATTTGTCTGTCATCGGCCATTACTACA 1126
BSNT_01251___ 1139 T---------GGGAACA--CTT---------GCCGCGTT-TACGGTCATA 1167
| ||.||.| ||| ||..|||| |..||| ||
BL05203 1127 TTCGGAGGCAGGAAAAAGGCTTTTTAAAAACGCTTCGTTATTTGGT--TA 1174
BSNT_01251___ 1168 T---------------CTATT------GCTGTCATTG-TGCTAAGAAAGA 1195
| ||.|| ||||.| || ||||.||
BL05203 1175 TGCCCTTTTTAGGGGCCTCTTTCTGCGGCTGGC--TGCTGCTTAG----- 1217
BSNT_01251___ 1196 AACATCCTGAAATCAAGGCGTCCT--TCAGAGTGCCGTTCGTTCCGGTTG 1243
||||...||| ||.||| || |.| ||.|..||||.||
BL05203 1218 --CATCAGCAAA--AATGCG--CTAATAA--------TTGGAGCCGGCTG 1253
BSNT_01251___ 1244 ------TGCCGATTATCAGCGCAGGCATCTGCCTTTGGTTCATGTACAG- 1286
|||||.||.| ||.|.|.|||.|||||.|..|.|
BL05203 1254 GCTGATTGCCGGTTTT----------ATATACTTTTTGTTCAGGATCCGT 1293
BSNT_01251___ 1287 --CCTTCCCGGCGTCACAT--GGCTTTCATTTGTCATCTGGATCGCTGTC 1332
.|||||.|.|||||||| |||||| ||||||..||
BL05203 1294 TCTCTTCCGGACGTCACATTCGGCTTT-------------GATCGCGATC 1330
BSNT_01251___ 1333 GGAACGCTGGTTTACTTCCTATATTCGAGAAAACACAGCTTATTAAACAA 1382
.| ||||.|
BL05203 1331 CG--CGCTAG---------------------------------------- 1338
BSNT_01251___ 1383 ATAA 1386
BL05203 1338 ---- 1338
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