Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03237 and BL05219
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03237___ypoP.1.5803.seq
# -bsequence dna-align/BL05219___ypoP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03237___ypoP-BL05219___ypoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03237___ypoP-BL05219___ypoP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03237___ypoP
# 2: BL05219___ypoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 446
# Identity: 316/446 (70.9%)
# Similarity: 316/446 (70.9%)
# Gaps: 31/446 ( 7.0%)
# Score: 1097.5
#
#
#=======================================
BSNT_03237___ 1 TTGAAAGTAAGAACACAGATGATGTACGATATGGAAACTTTACTCCGTAA 50
||||||||.|||..|||.||||||||.|||||||||.|..|.||.||.|.
BL05219___ypo 1 TTGAAAGTTAGAGAACAAATGATGTATGATATGGAAGCACTGCTTCGCAC 50
BSNT_03237___ 51 AGTCTTTAAACAAATACGCAATGAAATCAATGAAATTTTAGATAAAGAGC 100
|||.||||||||.|||||..||||.||.|||||..|..|.||.||||||.
BL05219___ypo 51 AGTATTTAAACAGATACGTGATGAGATAAATGAGCTGCTCGAAAAAGAGA 100
BSNT_03237___ 101 TGTCGCGGAATGAATTCACCATTCTTCGGATCCTCAGTGAACAAGGGCCT 150
||||.||.||||||||||..|||||.||..|.||.||.||.|||||.||.
BL05219___ypo 101 TGTCCCGCAATGAATTCATGATTCTCCGCCTGCTGAGCGAGCAAGGTCCA 150
BSNT_03237___ 151 AAAAAAGTCACTGAATTTGCGCCTATTTTAGAGGTATCGGCAAGCCACAT 200
||.||||||||.||.|||||..|.|||||||..||.||.||||||||.||
BL05219___ypo 151 AAGAAAGTCACGGAGTTTGCAACGATTTTAGGCGTTTCAGCAAGCCATAT 200
BSNT_03237___ 201 TACGGCTGTGACCGATGCGCTGGTAGAAAAGGAATGGATTACGAGAATCA 250
.||.|||||.||||||||..||||.|||||.|..|||||.||||||.||.
BL05219___ypo 201 CACAGCTGTAACCGATGCATTGGTTGAAAAAGGCTGGATCACGAGAGTCC 250
BSNT_03237___ 251 GATCGAAGGAAGACAGACGCATCATCCGCATTCATATCACTGAAGCGGGC 300
|.||.||.|||||||||||.||||||...||.|||.|.||.||.||.||
BL05219___ypo 251 GGTCAAAAGAAGACAGACGGATCATCAAAATCCATCTGACAGACGCAGG- 299
BSNT_03237___ 301 GAAAAAGTCCT--TCAGCACTTTAACG-AGAAA--AAAACGGAATATTTC 345
|||||...| ||||...||| || ||||| |||||||||||||..
BL05219___ypo 300 --AAAAGAAATTATCAGATATTT--CGAAGAAAAGAAAACGGAATATTAT 345
BSNT_03237___ 346 TTTAAACGCTTTGACTGCTACACTGAT-----GCTGAACTTGCCACGTTA 390
||.||.||.||...|.||||||.|||| |||||| .|||.|.
BL05219___ypo 346 TTCAAGCGGTTCAGCAGCTACAGTGATGAAGAGCTGAA-----AACGCTG 390
BSNT_03237___ 391 ATCGAGCTCTTCAGCAAACTTGATAAAAAACGGTGA---------- 426
||.||.||.|||||||||.|.||.||||||||| ||
BL05219___ypo 391 ATTGAACTGTTCAGCAAATTGGACAAAAAACGG-GAACAGCGCTAA 435
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