Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01543 and BL05221
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01543___yhcK.1.5803.seq
# -bsequence dna-align/BL05221___yhcK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01543___yhcK-BL05221___yhcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01543___yhcK-BL05221___yhcK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01543___yhcK
# 2: BL05221___yhcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1291
# Identity: 655/1291 (50.7%)
# Similarity: 655/1291 (50.7%)
# Gaps: 413/1291 (32.0%)
# Score: 1291.5
#
#
#=======================================
BSNT_01543___ 1 ---TTGCTGAAAGAACTGTTTGTAAATTTCACCATTTTAATCACATTTAA 47
||..|.|..||..|.|||.|.|||||...|||||||| |||.
BL05221___yhc 1 ATGTTTTTAATCGATTTATTTTTGAATTTGTGCATTTTAA------TTAC 44
BSNT_01543___ 48 TTATCTCTT------CACCCACCTGTTTAAA-----------------GA 74
||..||||| |||.||.| |||| ||
BL05221___yhc 45 TTCGCTCTTTATTTACACTCAGC----TAAAGTGGAATATTTTTTCCCGA 90
BSNT_01543___ 75 AAGGCTAGTACATAAAAAA------------GACAGCATATCTTTTCAAG 112
||.|||| .|.|.|||.|| |||.|||| ||||
BL05221___yhc 91 AAAGCTA-CAAACAAACAACTTGATTGGATTGACGGCAT-TCTT------ 132
BSNT_01543___ 113 CTGTTAAAGGACTGGCCTGCGGTTTGCTCGGGGTTATTCTGATGGT-TTT 161
.||||..|||||||...|.|.||.|||.| |||
BL05221___yhc 133 -----------------GGCGGGGTGCTCGGAAATGTGCTTATGTTCTTT 165
BSNT_01543___ 162 TGGAT-----TTACCTATCAG-CATTCAATTATTGATCTTCGA------- 198
|.||| ..|||.||.|| | ||||.||||
BL05221___yhc 166 TCGATCCAGGCAACCGATGAGAC-----------GATCGTCGACTTGCGT 204
BSNT_01543___ 199 AATATCCCTATTATGA--TTGCCGCTCTTTATGGA--GGCTGGGTTTCAA 244
.||.||||..|.|||| ||| |.|||||..| ||| |..||||
BL05221___yhc 205 TATGTCCCCGTCATGATTTTG----TTTTTATTTACGGGC-GCCTTTC-- 247
BSNT_01543___ 245 CGGCAACGGCC-----CTG------GCCATGATCACTGCAGGCCGCTTGC 283
||||| ||| || ||||.|..|.|||..|.||
BL05221___yhc 248 ------CGGCCTTTATCTGTTCTCTGC--TGATTATAGGAGGAAGGTT-- 287
BSNT_01543___ 284 TGATTAC--GATGAACACATC------TGCA---CT-------------- 308
||.|||| ||.|||.||||| |||| ||
BL05221___yhc 288 TGTTTACGGGACGAATACATCCTCGATTGCAGCGCTTATAGGTATGATCG 337
BSNT_01543___ 309 --ATACTC---GGTTATTA--TCATT----------TGTAT-----CGCT 336
|||.|| ||.||||| ||||| ||.|| ||
BL05221___yhc 338 TGATATTCGCAGGATATTATCTCATTCTTCGGATCATGGATAAAGACG-- 385
BSNT_01543___ 337 GCCATTCCGTCACTCATTGTTTCTAGAAGAAAAAAAGTTCAACTAAAACA 386
|||.||||.||.| |||| |||
BL05221___yhc 386 ------CCGGCACTTATCG--------------AAAG----------ACA 405
BSNT_01543___ 387 --TGCTTT--CTATCTTTT---AAT-----CATCACAAAT---AGCTTGA 421
|||.|| .||| |||| ||| .||..|||.| |.|||||
BL05221___yhc 406 TTTGCATTAGTTAT-TTTTGCCAATGTGGCGATTTCAATTGTGATCTTGA 454
BSNT_01543___ 422 T-CTCCTTTTCCTTTTATTTTCTTATAGATTTACAT-TCAT--ACGAACT 467
| .||| |||.|..|.|.|||||| ||..|.|| |.|| |||...|
BL05221___yhc 455 TGATCC--TTCATGATTTCTTCTTA---ATGAAAATGTTATTGACGTGGT 499
BSNT_01543___ 468 TCATTTGTATTTTTGGATC--ATATCAATAGCGGGCGGC---ATGCTCAG 512
|| ||.||||| ||| .|||| |||||| |.| ||||
BL05221___yhc 500 TC---TGGATTTT---ATCTACTATC-------GGCGGCTTTACG-TCAG 535
BSNT_01543___ 513 TTTATATATTAT-TGATCATGAAACAAATGCACATCTTCTTTTTAAACAA 561
||||.||..| |.|| ||..||.|||..|.|||.||||.||.|||.|.
BL05221___yhc 536 --TATACATCGTCTCAT-ATTTAAGAAAATCTCATTTTCTGTTAAAAAAG 582
BSNT_01543___ 562 TAT-AAGTTTCAGG---CGCACTTTGACTTTTTAACAGGCGTGTATAA-- 605
||| ||| ||| ||....||||.|.||||||.||..||.||||
BL05221___yhc 583 TATGAAG----AGGAATCGTCGATTGATTATTTAACGGGATTGAATAATG 628
BSNT_01543___ 606 -CCGAAGAAAATTTGAAGAAACCACGAAAGCTC-TGTATCA---GC---- 646
|| |..|||||||.|..|....|||.|||| |.|.||| ||
BL05221___yhc 629 TCC---GGCAATTTGATGCGATATGGAATGCTCATATTTCAAACGCAAAA 675
BSNT_01543___ 647 -AGGCGGCCGATACCCCGCATTTTCAATTTGCACTGATTTATATGGATAT 695
||..|..|||.| .|.|.|| ||||| |||..||.|||||
BL05221___yhc 676 GAGAAGAACGAGA-----AACTGTC--TTTGC-----TTTTGATCGATAT 713
BSNT_01543___ 696 CGATCATTTTAAGACCATCAATGACCAATATGGCCATCATGAA--GGAGA 743
||||.||||.||.||.||.|||||....||.||.||| |.|| |||||
BL05221___yhc 714 CGATTATTTCAAAACGATTAATGATACGTACGGACAT--TCAAATGGAGA 761
BSNT_01543___ 744 TCAGGTGCTCAAAGAGCTGGGGTTACG--TCTGAAGCAG--AGC---ATC 786
|..|.|..|.|||||..|.|| .||| |.|.||..|| .|| |||
BL05221___yhc 762 TGCGATTTTAAAAGAATTAGG--AACGATTTTAAAAAAGTCTGCCCGATC 809
BSNT_01543___ 787 CGAA-ATACAGATCCTGCCGCTCGGAT-------CGGCGGTGAAGAATTT 828
.||| ||| |||.|| ||||||.|||||.|||
BL05221___yhc 810 GGAAGATA-------------TCGTATCAAGAAACGGCGGAGAAGAGTTT 846
BSNT_01543___ 829 GCCGTTCTCCTGCCGAACTGTTCTC-TTGATAAAGCAGCCCG----AATC 873
.|.||..|..|||||||||||||.| || .||||.|.| .||.
BL05221___yhc 847 TCGGTCATATTGCCGAACTGTTCCCATT-----CGCAGGCTGCAGAGATT 891
BSNT_01543___ 874 GCTGAACGGAT---CAGGAGAACTGTAAGTGATGCACCGATTGTATTAA- 919
|||||..||.| ||.| |||.|| ||..|||..|.|.|.||.|
BL05221___yhc 892 GCTGAGAGGGTGCGCAAG-GAAGTG-----GAGACACACACTTTTTTCAT 935
BSNT_01543___ 920 --------CAAACGGTGAAGAGCTTTCA-GTTACGATATCACTAGGGGCC 960
|||| .|||| |||| .|||||.|.||..|.||.|..
BL05221___yhc 936 TTCTCATTCAAA----AAAGA---TTCATATTACGGTTTCGATTGGAGTT 978
BSNT_01543___ 961 GC-TCATTACCCCA--------ATAATACGGAACAGCCAGGATCCTTGCC 1001
|| .||||.||..| |.|.|||||.|.||| |..|||..
BL05221___yhc 979 GCGGCATTTCCGGAGGTGATTCACAGTACGGGAGAGC-----TGATTGAA 1023
BSNT_01543___ 1002 CATTCTTGCCGATCAAATGCTT-TACAAAGCGAAAGAAAC---GGGACGG 1047
.| .||||||| ||||.|| ||||..||.|| |.|| |||| |.
BL05221___yhc 1024 AA----AGCCGATC-AATGTTTGTACAGGGCTAA--ACACCTTGGGA-GA 1065
BSNT_01543___ 1048 AACAGAGTGT--------GTTTTTCAGAAAAAAAAGAATGA 1080
|||||||||| |||| ||
BL05221___yhc 1066 AACAGAGTGTGCACCTCCGTTT----GA------------- 1089
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