Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03299 and BL05232
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03299___ypvA.1.5803.seq
# -bsequence dna-align/BL05232___ypvA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03299___ypvA-BL05232___ypvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03299___ypvA-BL05232___ypvA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03299___ypvA
# 2: BL05232___ypvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2004
# Identity: 1433/2004 (71.5%)
# Similarity: 1433/2004 (71.5%)
# Gaps: 162/2004 ( 8.1%)
# Score: 4887.5
#
#
#=======================================
BSNT_03299___ 1 GTGACAACATCACGTTTGCCTTTTTCTTTAACGAAAACAAAGAATTTTTA 50
||||||.||||.|||.||||||||||.|||||.||||||||.||.|||||
BL05232___ypv 1 GTGACAGCATCTCGTCTGCCTTTTTCATTAACAAAAACAAAAAACTTTTA 50
BSNT_03299___ 51 TGAAGAATTGAACAATTGGATTGGTGACGTGTTTTACGATATCCTTCCCG 100
|||||||.|||||||||||||.|||||.||.|||||||||||.|||||.|
BL05232___ypv 51 TGAAGAACTGAACAATTGGATCGGTGATGTATTTTACGATATTCTTCCTG 100
BSNT_03299___ 101 AAAAAGGGTTTGATCTTCGGGACGAGCAAGTATTTATGGCTTTTCAGCTG 150
|||||||.||||||.|.||.||.||||||.||||.|||||||||||..|.
BL05232___ypv 101 AAAAAGGCTTTGATTTGCGCGATGAGCAAATATTCATGGCTTTTCAATTA 150
BSNT_03299___ 151 GAGCGGGCGTTTAAAGAGAAAAAAGTCATGTTCGCCGAAGCTGGAGTGGG 200
||||||||.|||||.||.||.||.||||||||.||.|||||.||.||.||
BL05232___ypv 151 GAGCGGGCATTTAAGGAAAAGAAGGTCATGTTTGCGGAAGCCGGCGTCGG 200
BSNT_03299___ 201 AACGGGGAAAACGCTGGTTTATCTTCTTTTTGCAATCAGCTATGCAAGGT 250
.||.||.||||||||.||.||||||||.|||||..|.||||||||.||||
BL05232___ypv 201 CACCGGAAAAACGCTCGTCTATCTTCTGTTTGCCTTGAGCTATGCCAGGT 250
BSNT_03299___ 251 ATGTCGGCAAACCCGCCATCATCGCTTGTGCAGATGAAACATTAATTGAA 300
||...|||||.||.||..|||||||.||.||.|||||.||..|.||.|||
BL05232___ypv 251 ATACGGGCAAGCCGGCGGTCATCGCCTGCGCGGATGAGACGCTGATCGAA 300
BSNT_03299___ 301 CAGCTGGTGAAAAAAGAGGGCGATATTTCTAAGCTGGCTGAGCATCTTGA 350
|||||.||.||||||||.|||||.||||.|||..|..|.||||||.|.|.
BL05232___ypv 301 CAGCTCGTCAAAAAAGAAGGCGACATTTATAAAATTTCCGAGCATTTAGG 350
BSNT_03299___ 351 TCTGAAAATTGATACAAGACTGTCA--AAATCACATGAACAATATTTATG 398
.||||..||.||..||||.| ||| ||.||.|||||.|||||||||||
BL05232___ypv 351 CCTGACGATCGACGCAAGGC--TCAGCAAGTCGCATGATCAATATTTATG 398
BSNT_03299___ 399 CTTGAAGAAGCTTGAAAAAACAATGCAGCGTTCTGATGATGATAAATGGC 448
.|||||.||.||.||.|||||.||||||||.|||||||||||.|||||||
BL05232___ypv 399 TTTGAAAAAACTGGAGAAAACGATGCAGCGCTCTGATGATGAAAAATGGC 448
BSNT_03299___ 449 TGGATCTTTATG--AGTCGTTACCGTCATTTGTCCACGAGTCACAGGCGA 496
|.||.|||||.| |||| |.|||||.||.||.|||||.||.||||..|
BL05232___ypv 449 TTGACCTTTACGAAAGTC--TGCCGTCTTTCGTTCACGAATCGCAGGGCA 496
BSNT_03299___ 497 TGCAGCGC-TTTTATCCGTATGGCGACCGTAAGCAGTACGCAAATC---- 541
||||| || |||||||||||.||||||||.||..|| ||.||
BL05232___ypv 497 TGCAG-GCTTTTTATCCGTACGGCGACCGAAAAGAG-----AATTCGTCT 540
BSNT_03299___ 542 -TATCGAATGAAGAGTGGTCTGACGTAAGCTACGACTCGTTTCAGGACTG 590
||||.||.||.|||||||||||..|..|.||||||||.|||||||||||
BL05232___ypv 541 TTATCAAACGATGAGTGGTCTGAAATCGGTTACGACTCTTTTCAGGACTG 590
BSNT_03299___ 591 TCTGACTTGTGATATGAGACACAGATGCGGTCTGACACTTTCCAGAGATT 640
|||.||.|||||||||||.|||.|.|||||.||.|||||.||.|||||..
BL05232___ypv 591 TCTTACATGTGATATGAGGCACCGCTGCGGGCTCACACTGTCAAGAGACC 640
BSNT_03299___ 641 ACTATCGCAAGTCAACGGACTTAATCATATGTTCCCATGATTTTTATATG 690
|.|||||.||.|||||.||.||.|||||.||||||||||||||.||||||
BL05232___ypv 641 ATTATCGAAAATCAACCGATTTCATCATCTGTTCCCATGATTTCTATATG 690
BSNT_03299___ 691 GAGCATGTGTGGACGGAAGAATCACGCAAACGAGAGGGCCAGCTGCCGCT 740
|||||.||.|||||||||||..|..|.||.||.||.||||||||.|||||
BL05232___ypv 691 GAGCACGTTTGGACGGAAGAGGCGAGAAAGCGGGAAGGCCAGCTTCCGCT 740
BSNT_03299___ 741 CTTGCCTGATCATAGTGCAGTTGTATTTGATGAGGGGCACTTGTTAGAGT 790
.|||||.||.||.||.|||||.||.||||||||.|||||..||.|.||||
BL05232___ypv 741 TTTGCCGGAGCACAGCGCAGTGGTTTTTGATGAAGGGCATCTGCTCGAGT 790
BSNT_03299___ 791 TTGCTGCGCAAAAAGCGCTAACCTATAGAGTGAAGCAGTCTACTCTTGAA 840
||||.||.|||||||||||.||.||.||.|||||.||.||.||.||.|||
BL05232___ypv 791 TTGCGGCCCAAAAAGCGCTGACATACAGGGTGAAACAATCCACGCTCGAA 840
BSNT_03299___ 841 TTGTTTTTAGAACGATTGCT--GCAAAATGACATCAGAGAAGAGTTTGCA 888
.||||..|.||.||..|||| || |||||||||||||||||.||||||
BL05232___ypv 841 ATGTTCCTTGAGCGCCTGCTCGGC--AATGACATCAGAGAAGAATTTGCA 888
BSNT_03299___ 889 GA-ATTGATTGAAGATGCGCTTCTCGCAAACGACGAATTTTTCTATGTTC 937
|| .||| |.|||||.|||||||.|||.|||||||||||||||..|.|.|
BL05232___ypv 889 GAGCTTG-TCGAAGAAGCGCTTCGCGCCAACGACGAATTTTTCGGTTTGC 937
BSNT_03299___ 938 TTTCTGAAGAAT---CAAAGGAAGTAGCCGGTTCACACCGTTTAGAAATA 984
||.|.||| ||| .||| |||.||..||.||..|.||..|....||.
BL05232___ypv 938 TTACGGAA-AATGCCGAAA--AAGCAGAAGGCTCTGAGCGCATGCGCATC 984
BSNT_03299___ 985 AAAAATGACCAGCG-TGTCAAAAAGGCGGCGGACGAGCTTTGCCGTTTAC 1033
|||.|.|| .|.|| |||.|||||.|||||.|.||||||.|....|||.|
BL05232___ypv 985 AAAGACGA-TACCGATGTGAAAAAAGCGGCCGCCGAGCTGTATGATTTGC 1033
BSNT_03299___ 1034 TTGATAAAATCGGTGAGGCACTTGTATTTGAGTCTGAAATGTATACGATT 1083
||||.||||||||.|||||.||.||.||||||...||..||||.|||||.
BL05232___ypv 1034 TTGAAAAAATCGGAGAGGCGCTCGTTTTTGAGGGCGAGCTGTACACGATC 1083
BSNT_03299___ 1084 GATCAATACGAGTTGTCAGTAGTGGAAGAATACGTTGAACAAATGGCGTA 1133
||.||.||||..||..|.||.||.|||||.||..|.|||||.|||||.||
BL05232___ypv 1084 GACCAGTACGCTTTAACTGTTGTCGAAGAGTATTTAGAACAGATGGCTTA 1133
BSNT_03299___ 1134 TT--CATTATCTCTATATCAAAAGGATGCAATCAGCTGGC-TGGAGAAAA 1180
.| |.||..|||||.|..|||| ||||.|||||||||| ||.|.||||
BL05232___ypv 1134 CTCCCTTTCGCTCTACAGGAAAA--ATGCGATCAGCTGGCTTGAACAAAA 1181
BSNT_03299___ 1181 AGGAAGC-AGAATCAACTTTTGTCGTGATGCCGAGAACGGTAGCAGAAGT 1229
|| ||| .||.||.||.||.|||||.|||||||||||.||..|.|||||
BL05232___ypv 1182 AG--AGCTTGAGTCGACATTCGTCGTCATGCCGAGAACCGTCTCTGAAGT 1229
BSNT_03299___ 1230 ACTTGGCGAAAAAGTGTTTTCTAAGAAAATTCCTTATATCTTTTCTTCTG 1279
.||.||.|||||.|||||.||.|||.|.|||||.|.|||.||.||.||.|
BL05232___ypv 1230 TCTCGGAGAAAAGGTGTTCTCCAAGCAGATTCCGTTTATTTTCTCATCGG 1279
BSNT_03299___ 1280 CTACGCTGTCAGAAGGCGGTTCGTTTGATTATATTGCCGA-CAGTCTTGG 1328
|.||..|.||.|||..|||.|||||.|||||| |||.||| |||.||.||
BL05232___ypv 1280 CGACATTATCGGAAAACGGATCGTTCGATTAT-TTGGCGACCAGCCTCGG 1328
BSNT_03299___ 1329 GATTCATGATTATTTGTCATTAACTGTTGATTCCCCTTATGATTATGACG 1378
|||.|..|||||.||.|||||.||.||.|||||.||.||.||||||||.|
BL05232___ypv 1329 GATCCGCGATTACTTATCATTTACCGTCGATTCGCCGTACGATTATGAAG 1378
BSNT_03299___ 1379 AGCAAATG--AGTATTAATCTATACGCAA-------AAACAGATATGGCC 1419
||||.||| |||.|..|||.|| ||| |||.||| .
BL05232___ypv 1379 AGCAGATGAAAGTGTACATCCAT---CAAATCGAGGAAAAAGA------A 1419
BSNT_03299___ 1420 GCTGAACAAAAAACGGCTGAAA--CGATTGAAACAATCAAACGTTACAAA 1467
||..||.||.||.|||| || || || |||||||| .||
BL05232___ypv 1420 GCGAAAGAAGAAGCGGC---AATCCG--TG---CAATCAAA------GAA 1455
BSNT_03299___ 1468 -------GGAAGAACGCTGGTGCTTTTCCCTTCTTTTGAAGAATTAAACG 1510
||||| ||||||.|.||.||.||.||||||||| |
BL05232___ypv 1456 TCTGGAGGGAAG-ACGCTGATCCTGTTTCCGTCTTTTGAA---------G 1495
BSNT_03299___ 1511 AGTTTAAAGAGCTGTC-----GGCGGCATGGGAGCTGC------------ 1543
||.|| ||||| .|||.| ||| ||||
BL05232___ypv 1496 AGCTT------CTGTCCTTCAAGCGCC---GGA-CTGCACAGGAATCATT 1535
BSNT_03299___ 1544 --CGTATCCAATTTTCTTCGAAGGTGATGAGGAAATCAGCAGCTTAGTAG 1591
|||.|||..|||.|||.|||||.|||||.||||||||.|...|.||.|
BL05232___ypv 1536 TTCGTTTCCCGTTTACTTTGAAGGGGATGAAGAAATCAGTACAATCGTTG 1585
BSNT_03299___ 1592 AGAAATTCCAAGAGGAAGAGGAAACAGTACTT-TGTTCAGTTCACTTATG 1640
|.||.||.|||..||.|||.|||.|.|| ||| ||.||.||.||..||||
BL05232___ypv 1586 AAAAGTTTCAAACGGTAGAAGAATCCGT-CTTGTGCTCTGTCCATCTATG 1634
BSNT_03299___ 1641 GGAAGGACTCGATATTCCCGGTGA--CGCATTGAAGAATGTTACCATTTG 1688
||||||.||||||||||||||.|| ||| ||.|| |||||.|.|||.||
BL05232___ypv 1635 GGAAGGGCTCGATATTCCCGGAGACCCGC-TTCAA-AATGTCATCATCTG 1682
BSNT_03299___ 1689 GTCATTGCCTTTCCCGCCACACGATCCTGTATTTACAGCGAAGCGCAACG 1738
|||..|.||.||.|||||.||.|||||.||.|||..|||||||||.|.||
BL05232___ypv 1683 GTCGCTCCCATTTCCGCCGCATGATCCCGTGTTTGAAGCGAAGCGGAGCG 1732
BSNT_03299___ 1739 GAGCGAAAAAGGATCCGTTCGAAGAAGTTGATCTGCCATATATGTTGTTA 1788
|.|.|.||||.| ||.|||| .|||||.||.||.||.||.|||.||.||
BL05232___ypv 1733 GCGTGGAAAACG--CCTTTCG-CGAAGTAGACCTTCCTTACATGCTGCTA 1779
BSNT_03299___ 1789 CGTGTACGGCAGGGCATCGGGCGCCTGATTCGCTCGAATCAA-----GAC 1833
.|..|.||.||.||.|||||.||.|||| ||..||||| |||
BL05232___ypv 1780 AGACTTCGCCAAGGGATCGGACGTCTGA-----TCAGATCAAACAGCGAC 1824
BSNT_03299___ 1834 AGCGGCTCGATTCA-CATTTACGCTGGCGGAGAAAATGAACGCATCAT-T 1881
||||||.||| ||| |||||..||.||||..|||||.|||.|.| || |
BL05232___ypv 1825 AGCGGCACGA-TCAGCATTTTTGCGGGCGATGAAAAAGAATGGA--ATGT 1871
BSNT_03299___ 1882 GAT----GAGGTCAAAAAGGTCT----TGCCTGTTGAACC-GCACATGAT 1922
||| ||.|||.|| ||| |.||||||.|.|| |...||| |
BL05232___ypv 1872 GATAAAAGAAGTCGAA----TCTGTTCTTCCTGTTCAGCCAGTCTATG-T 1916
BSNT_03299___ 1923 GTAA 1926
.|||
BL05232___ypv 1917 ATAA 1920
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