Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02104 and BL05247

See Amino acid alignment / Visit BSNT_02104 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_02104.1.5803.seq
#    -bsequence dna-align/BL05247.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02104-BL05247.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02104-BL05247.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02104
# 2: BL05247
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     525/929 (56.5%)
# Similarity:   525/929 (56.5%)
# Gaps:         196/929 (21.1%)
# Score: 1264.0
# 
#
#=======================================

BSNT_02104         1 -------------------------------ATGACCGTGCAG-------     12
                                                    |.||.|...|||       
BL05247            1 TTGGAGCCACGAGTCATTGTCCAAGTTGTAGAAGAACTCTCAGCCACTTT     50

BSNT_02104        13 ---GATATCTG-TATTCAT------TTAGGTATCTCTCGCTCGTCTTATT     52
                        .|||..|| |||||.|      |||||.||..||...||..|.||||
BL05247           51 TAAAATAATTGATATTCTTGGAGTATTAGGCATACCTAAGTCAACATATT    100

BSNT_02104        53 ATCGTTGGAAGAAGAA-TCTGAAGAAAGATCATCCCAAGCGCCATTTAGA    101
                     |.||||||||.||||| |.| ||.||||.|.|  .|.|.|..|| |||||
BL05247          101 ACCGTTGGAAAAAGAAGTAT-AAAAAAGTTGA--GCTAACTTCA-TTAGA    146

BSNT_02104       102 AAAACAAATCGGCACGTTGTGCCGAG-AGCACCAGTATCGATATGGATAT    150
                     |.|.|.|.|...||.|.|||| ..|| |..||...||||..|||||..||
BL05247          147 AGAGCTAGTAATCAAGCTGTG-TAAGAAAAACTTCTATCACTATGGTCAT    195

BSNT_02104       151 CGAAAAATCACAGCTATATTAAA-AAAGAGAATG-------TGTATTAAC    192
                     ||.|||||.|.|.|.||.||||| |.|.||.|||       ||||  |||
BL05247          196 CGTAAAATTAAATCCATCTTAAACAGAAAGTATGGGATAAATGTA--AAC    243

BSNT_02104       193 CATAAAACGGTTCAGCGTATTATGCAGAAA-------AATCAGTGGCAGT    235
                     |..|||||.||.||....|||||||| |||       |.||||||.||  
BL05247          244 CGCAAAACTGTACAAAAAATTATGCA-AAAGTTTGAGATTCAGTGTCA--    290

BSNT_02104       236 GCCGGGTTAAGGTGAAAAAGCG-CAAGAAGAATGGGCAGCCATATGCCGT    284
                         .|||||   |||.||||| ||| |||.|        |||.|   ||
BL05247          291 ----AGTTAA---GAAGAAGCGACAA-AAGTA--------CATTT---GT    321

BSNT_02104       285 GGTCGACAAT-ATATTAGATAG----GA--ACTTTCAGTC-TGAT-----    321
                     ||| ||.|.| |||||  ||.|    ||  |||.|||.|| |.||     
BL05247          322 GGT-GAGAGTAATATT--ATTGTGCCGAACACTCTCAATCGTAATTTTAA    368

BSNT_02104       322 ---CATCCTCT----TGAAAAACTAGTAACAGACATCACGTATTTGCCTT    364
                        .|.||..|    |||||||...|||||.|||||.||.||.||.||||
BL05247          369 AGCAAGCCGATTAAATGAAAAATGGGTAACCGACATTACCTACTTACCTT    418

BSNT_02104       365 ATGGACAGAAACAA--TTGTACCTTTCCAGTATATTGGATGTATATAATG    412
                     ||||...|  ||.|  ||.||..|.||.|..||..||||..|||||||..
BL05247          419 ATGGCTCG--ACTATGTTATATTTATCAACGATTATGGACTTATATAACA    466

BSNT_02104       413 GAGAAGTGATTGCTTTTACGATTGGAGATAAG---CAGGACACAGACTTT    459
                     ..|||.|..|.||||..|..||   ||.||.|   ||.||.|...||.|.
BL05247          467 ACGAAATAGTGGCTTACAAAAT---AGGTACGAGCCAAGATATTAACCTA    513

BSNT_02104       460 GTCTTACACACACTTGATCAACTGCCAACACTGCCTG-AGAACTGCGT--    506
                     ||.|||.||||| ||||      |..||     .||| ||||.|.|||  
BL05247          514 GTATTAGACACA-TTGA------GGGAA-----GCTGTAGAATTACGTAA    551

BSNT_02104       507 ---------GTTA------CATAGTGACCAAGGATCTGTGTATACATCTT    541
                              ||||      |||||.|||||.||||||||.|||||.||..
BL05247          552 ACCAGTAGGGTTACTTCTTCATAGCGACCAGGGATCTGTCTATACTTCAC    601

BSNT_02104       542 ACGAGTATCAGAAAGCTGTT-----AAAACAAAAGGCATTACCATGAGCA    586
                     |.|..||||||||     ||     |||..||||||||||||||..||||
BL05247          602 ATGCATATCAGAA-----TTTGGCCAAAGAAAAAGGCATTACCACAAGCA    646

BSNT_02104       587 TGTCCCGCAAAGGGACACCCGC--TGATAATGCCTCCATCGAATCGTTTC    634
                     ||||.||.|||||  .|.|.||  ||||||||||..|||.|||||.||||
BL05247          647 TGTCTCGAAAAGG--AAACTGCCATGATAATGCCGTCATTGAATCCTTTC    694

BSNT_02104       635 ATTCCTCACTAAAGTCTGA-------AACGTTCTATCTTAACAGCATTGA    677
                     |.|||||.||||||||.||       ||||.||.|..|  |.|||||..|
BL05247          695 ACTCCTCGCTAAAGTCGGAAGGATTTAACGCTCAAAGT--AGAGCATCTA    742

BSNT_02104       678 TCGAACCACGACCGCCAT-----CGTAGAACGCACTGTCATAGAATACAT    722
                     |  |.|||        ||     .||||.||..|.|||.|...|||||||
BL05247          743 T--ATCCA--------ATTCTAAAGTAGTACAAATTGTAAATCAATACAT    782

BSNT_02104       723 TCATTATTATAACAATATTCGTATTCAAACGAAACTAAACAACCAATCAC    772
                     ..||...|||||..||.|.||.|||||..|.|||.|||||.|||..||.|
BL05247          783 GTATCGATATAATCATGTACGAATTCAGGCAAAATTAAACTACCTGTCCC    832

BSNT_02104       773 CGATAAATTATCGGCAATTGGCTGTTTAA    801
                     |..|..|.||..||..|..|||.|..||.
BL05247          833 CACTGGAATACAGGGGACAGGCAGCATAG    861


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