Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03502 and BL05250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:29
# Commandline: needle
# -asequence dna-align/BSNT_03502___spoIIM.1.5803.seq
# -bsequence dna-align/BL05250___spoIIM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03502___spoIIM-BL05250___spoIIM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03502___spoIIM-BL05250___spoIIM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03502___spoIIM
# 2: BL05250___spoIIM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity: 485/675 (71.9%)
# Similarity: 485/675 (71.9%)
# Gaps: 48/675 ( 7.1%)
# Score: 1700.0
#
#
#=======================================
BSNT_03502___ 1 ATGCGAAA------AATCTCTTATAAGGA---CATGTTTCTCAGGCATGT 41
|||||.|| |||| ||.|| |||.|||| ..|||.|
BL05250___spo 1 ATGCGGAAGCCCACAATC------AAAGAGCTCATCTTTC---AACATAT 41
BSNT_03502___ 42 CAAAGATCATCTCTCTCTTTATATATTTGTGTCAGTGCTGTTTTTCATGG 91
.||.||.|||||.||..|.|||.|||||||.||.||||||||.||.||||
BL05250___spo 42 GAAGGACCATCTGTCGATCTATTTATTTGTTTCTGTGCTGTTCTTAATGG 91
BSNT_03502___ 92 GTGTCATCTTTGGCGCGATTATTGTCAACAGTATGACCATCAGCCAGAAA 141
||||.||.||.||||||.|.||.||||||||.|||||.|||.|.||.|||
BL05250___spo 92 GTGTGATTTTCGGCGCGGTCATCGTCAACAGCATGACGATCGGTCAAAAA 141
BSNT_03502___ 142 GAAGATTTATACTACTACTTAAGTCAATTTTTTGGACAGCTTTCGGATGG 191
||||||||.|.||||||.||.|.|||||||||||||||||||||.||.||
BL05250___spo 142 GAAGATTTGTTCTACTATTTGAATCAATTTTTTGGACAGCTTTCCGAAGG 191
BSNT_03502___ 192 AAAA-CAGGCAAGTTCAGCTGATATGTTTGGGCAAAG-TATCTTTCATAA 239
|||| || ||.||.|||...||.||||||..|||.|| |.|| |||||||
BL05250___spo 192 AAAAGCA-GCCAGCTCAAAGGAAATGTTTTTGCAGAGCTTTC-TTCATAA 239
BSNT_03502___ 240 TGCAAAGTATTTAGGCCTGATGTGGATACTGGGAATTTCCGTCATTGGAA 289
|...||.|||||||||.|.||||||||.||.||.||.|||.||||.||..
BL05250___spo 240 TATGAAATATTTAGGCTTAATGTGGATTCTCGGGATATCCATCATCGGTC 289
BSNT_03502___ 290 TGCCGATTATTTTCATCATGATCTTTCTGAAAGGGATCGTCGTCGGCTTT 339
||||..|.|||||.||||||.||||..|.|||||||||||||||||.|||
BL05250___spo 290 TGCCCGTCATTTTTATCATGGTCTTCTTAAAAGGGATCGTCGTCGGATTT 339
BSNT_03502___ 340 ACTGTCGGGTTCCTAGTCAATCAGATGGGAGTAAGCGGGTTTTTCCTATC 389
||.|||||.||..|.||||||||.||||||.|.|.|||.||||||||.||
BL05250___spo 340 ACAGTCGGCTTTTTGGTCAATCAAATGGGAATCAACGGCTTTTTCCTGTC 389
BSNT_03502___ 390 TTTTGTCTCCGTTTTGCCGCAAAATGTGCTGCTGATTCCGGCTTATCTCA 439
||||||||||||..|.|||||||||.|.||||||||.|||||.||..|.|
BL05250___spo 390 TTTTGTCTCCGTGCTCCCGCAAAATATTCTGCTGATCCCGGCGTACTTGA 439
BSNT_03502___ 440 TTATGGGCACATGTGCAATTGCGTTTTCTTTAAAGTTAATCAGACAGCTG 489
|.||||||||.||.||.||.||.|||||..|.|.|.|.|||.|.|||||.
BL05250___spo 440 TCATGGGCACCTGCGCCATCGCCTTTTCGATGAGGCTCATCCGCCAGCTT 489
BSNT_03502___ 490 TTCGTGAAACGAAGCC-TGCATGACGCGCCGATTCAATGGTTCGGGCGGT 538
||.||.|||||.|||| |||| ||.||.||..|.||.|||||.||.||.|
BL05250___spo 490 TTTGTTAAACGCAGCCTTGCA-GAAGCACCTGTCCATTGGTTTGGCCGCT 538
BSNT_03502___ 539 ATGCCTTTGTGCTGCTGGTCATTCTGTTTTTAG------CGCTGATCTCA 582
|.||.|||||.| ||.|.|||.||.|.| |.||.||.||.
BL05250___spo 539 ACGCTTTTGTAC------TCGTCCTGATTCTCGCAATGTCTCTTATATCC 582
BSNT_03502___ 583 TCTCTCTTTGAAGCATACTTATCTCCTGTTTTAATGGAAAAGCT------ 626
|||.||||||||||||||.|.||.||.||.||.|||||||||||
BL05250___spo 583 TCTTTCTTTGAAGCATACCTTTCGCCAGTGTTGATGGAAAAGCTGACAGA 632
BSNT_03502___ 627 -TACATCT-----AGACTTTTTTAA 645
|||.||| |.||....||||
BL05250___spo 633 GTACGTCTTGCCGAAACAGCATTAA 657
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