Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00870 and BL05251
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00870___yjcK.1.5803.seq
# -bsequence dna-align/BL05251.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00870___yjcK-BL05251.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00870___yjcK-BL05251.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00870___yjcK
# 2: BL05251
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity: 347/634 (54.7%)
# Similarity: 347/634 (54.7%)
# Gaps: 143/634 (22.6%)
# Score: 745.5
#
#
#=======================================
BSNT_00870___ 1 TTGAATCCTTTGTTGTTAGATGTTCCTTTACA-ATTAGAAACAGAAAGAC 49
.|||||||..|..||.|.|||.|||| ..||| .||.||||||||..|.|
BL05251 1 ATGAATCCGATACTGCTCGATTTTCC-GGACAGCTTCGAAACAGAGCGCC 49
BSNT_00870___ 50 TAATTCTTCGAGCACCACATCAAACAGGAGACGGGAAAATTGTAAACCAA 99
|..|..|..||||||| .|...|.||.|||||.||....|||.|..|.
BL05251 50 TGCTGATCAGAGCACC---GCGCGCCGGTGACGGCAAGGCAGTATATGAT 96
BSNT_00870___ 100 GCAATTAGAGATTCCTTTTCTGAATTAAAAGCGTGGTTGCCATTTGCTCA 149
||.|||..||.|||.|||||.|||.||||..|||||.||||.|||| ||
BL05251 97 GCTATTGCAGCTTCGTTTTCAGAACTAAAGCCGTGGATGCCGTTTG--CA 144
BSNT_00870___ 150 A-GAACTTCCTACTGTTGAAGAAAC----AGAGATAAACTTAAG------ 188
| |.|..||| |.|..|||| |.| |||.||.|||.|.||
BL05251 145 AGGGAGATCC--CCGAGGAAG-AGCGTGTAGAAATCAACGTCAGGCGGGC 191
BSNT_00870___ 189 AAATGCTCATATAAATTTTTT----AAAGAGAGAAAGTTTTCGTTTTCTT 234
|.|.||..||.| |.|||| ||.|| |||.||..|.|.|
BL05251 192 ACAGGCCGATTT---TATTTTGCGCAACGA-------TTTGCGGATGCAT 231
BSNT_00870___ 235 ATTTTTGATAAAGATA--GCAATGACTTTATTGGAATAACTAGCCTTCAG 282
|||||..|||||||.| |.|| |.||..|.||.|..||..|.|||||.
BL05251 232 ATTTTCCATAAAGAAACGGGAA--AATTCGTCGGCAGCACCGGTCTTCAC 279
BSNT_00870___ 283 AGAATTGACTGGAACATTCCTAAA---TGTGAAATTGGGTACTGGGTAAA 329
.|.||.|||||||| ..|.||| |.||||||.||.||.|||...|.
BL05251 280 CGCATGGACTGGAA---AGCGAAACGGTTTGAAATCGGCTATTGGCGCAG 326
BSNT_00870___ 330 TACTAAATATAGCGGGAATGGATATATGACAGAAGCAGTAAAAAAATTAG 379
|.|..|||.|..|||..|.||.||.||||||||||| |
BL05251 327 TTCCGAATTTTCCGGACAAGGGTACATGACAGAAGC-------------G 363
BSNT_00870___ 380 C-TAACTTTGGGTTACATAATATCAAATTT----AGAAGA---------- 414
| |||| |||..||| ..|||| ||||||
BL05251 364 CTTAAC----GGTCTCAT------TGATTTCGCGAGAAGACACGTCAGAG 403
BSNT_00870___ 415 --------ATTGAAATCAGATGTGATTCAACA--AATCTTAAAAGTCGTG 454
.||||.||..|.||||| ||.|| ||....|||||
BL05251 404 CCAAGCGGCTTGAGATATGTTGTGA--CAGCATGAACACGAAAAG----- 446
BSNT_00870___ 455 CTATTCCAGAAAAATTGG-----------GGTTTGTA--TTCGAAGGCAC 491
|||||||| ||| |||||..| || ||||.|..
BL05251 447 ------CAGAAAAA-TGGCGGAGCGCCTCGGTTTCGAGCTT-GAAGCCGT 488
BSNT_00870___ 492 TTTAAGAAATGATGA--TTTATCCGCA-GATGGTAGCAAGCTGACT---- 534
||||..||..||||| ||| ||.| |||...||| ||.|
BL05251 489 TTTACAAAGCGATGACCTTT---CGAACGATTTGAGC-----GAATATCG 530
BSNT_00870___ 535 -GACACTTGTTTTTATTC---CATAGTAAAGTAA 564
|||||.||..||||||| |||..| .|||
BL05251 531 GGACACATGCATTTATTCGCGCATCTT---CTAA 561
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