Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03504 and BL05252
See
Amino acid alignment /
Visit
BSNT_03504 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:29
# Commandline: needle
# -asequence dna-align/BSNT_03504___yqkK.1.5803.seq
# -bsequence dna-align/BL05252___yqkK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03504___yqkK-BL05252___yqkK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03504___yqkK-BL05252___yqkK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03504___yqkK
# 2: BL05252___yqkK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 390
# Identity: 154/390 (39.5%)
# Similarity: 154/390 (39.5%)
# Gaps: 192/390 (49.2%)
# Score: 393.5
#
#
#=======================================
BSNT_03504___ 1 ATGGCAAAAAGC----CAAGCGAAAAAGAAGCGGGAGCATCGATTGAGAA 46
|||||.|||||| |||| |||| |||||.|||||....|||||||
BL05252___yqk 1 ATGGCCAAAAGCAAGGCAAG-GAAA---AAGCGCGAGCACATGTTGAGAA 46
BSNT_03504___ 47 AC---GGCGGACGTGACGTCTTATTATCAAGAGGCA--GCAC---ACCAT 88
|| |||.||..||.||.| ..||||||||||| ||.| ||
BL05252___yqk 47 ACACAGGCAGAGATGCCGCC---GCATCAAGAGGCAAGGCGCCGGAC--- 90
BSNT_03504___ 89 CTTTCAGCACACATGAAAGATTAACAAAAAGCA---AAAAAGAGATT--- 132
|||.||||.||.|..|||..|||.||||||| ...|||||.||
BL05252___yqk 91 --TTCGGCACGCACGTCAGAAAAACGAAAAGCAGGCGGGAAGAGCTTGCA 138
BSNT_03504___ 133 ---TTGAAT---AAACGGAAGCATAAGAATCCTTATGA------TCATAC 170
.||.|| ||||..||.|..|||||.|||||||| ||||
BL05252___yqk 139 AAGCTGCATATGAAACATAAACGAAAGAACCCTTATGATTTGCTTCAT-- 186
BSNT_03504___ 171 AGCAGTTGATGATAAGGATTTTTT-------------------------- 194
|..|||.||||||.||.|||
BL05252___yqk 187 ----GAAGATCATAAGGGTTCTTTTTTTAGAAGATGCGCGAATAAATGCA 232
BSNT_03504___ 195 TGTGCCCCAA-------------------AAAG----CCGCCTAG----- 216
||||.|||.| |||| .|||.|.|
BL05252___yqk 233 TGTGTCCCGATATTCGCTCAAATCGTTCGAAAGGTCATCGCTTTGTAAAA 282
BSNT_03504___ 216 -------------------------------------------------- 216
BL05252___yqk 283 CGGCTTCAAGCTCGAAACCGAGGCGCTCCGCCATTTTTCTGCTTTTCGTG 332
BSNT_03504___ 216 ---------------------------------------- 216
BL05252___yqk 333 TTCATGCTGTCACAACATATCTCAAGCCGCTTGGCTCTGA 372
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.