Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00480 and BL05255
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00480___lip.1.5803.seq
# -bsequence dna-align/BL05255___lip.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00480___lip-BL05255___lip.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00480___lip-BL05255___lip.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00480___lip
# 2: BL05255___lip
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity: 427/683 (62.5%)
# Similarity: 427/683 (62.5%)
# Gaps: 112/683 (16.4%)
# Score: 1255.0
#
#
#=======================================
BSNT_00480___ 1 ATGAAATTTGTAAAAAGAAGGATCGT--TGCACTTGTAACAAT------- 41
|.|..|||| |.||.||.||.|.||
BL05255___lip 1 -----------------ATGCGTCGTCATTCATTTTTATCTATTCTATTG 33
BSNT_00480___ 42 -TTTG-ATGCTGTCTGTTACATCGCTGTTTGCGTTGCAGCCGTCAGCA-- 87
|||| ||||||||||||...||..|.|||.||||.|.|||.||||||
BL05255___lip 34 ATTTGCATGCTGTCTGTTGTGTCCGTATTTTCGTTCCGGCCTTCAGCAGC 83
BSNT_00480___ 88 -AAAGCCGCTGAACACAATCCAGTCGTTATGGTTCACGGTATTGGAGGGG 136
...||||||...||||||||.|||||.|||||.|||||.||.||.||.|
BL05255___lip 84 TTCCGCCGCTTCCCACAATCCGGTCGTCATGGTCCACGGCATCGGCGGAG 133
BSNT_00480___ 137 C--ATCATTCAATTTTGCGGGAATTAAGAGC-TATCTCGTATCTCAGGGC 183
| ||.|| ||.||....||.||||| |.| |||.|...||||||.|||
BL05255___lip 134 CCGATTAT--AACTTCATCGGCATTAA-ATCGTATTTACAATCTCAAGGC 180
BSNT_00480___ 184 TGGTCGCGGGACA-------AGCTGTATGCAGTTGATTTTTGGGACAAGA 226
| ||||| ||||.||.||..|..|.|||...||.||.|
BL05255___lip 181 T-------GGACAAGCAGTGAGCTTTACGCCATCAACTTTATCGATAAAA 223
BSNT_00480___ 227 CAGGCACAAATTAT---AACAATGGACCGGTATTATCACGATT------- 266
|.|| ||||.|| |||||||..|||..|||||| |||.|
BL05255___lip 224 CGGG---AAATAATATAAACAATGCTCCGAGATTATC-CGAATACATCAA 269
BSNT_00480___ 267 ---TGTGCAAAAGGTTTTAGATGAAACGGGTGCGAAAAAAGTGGATATTG 313
||||| |..||.||||.||.||...||||||.|||||||
BL05255___lip 270 GCGTGTGC---------TGAATCAAACAGGAGCATCAAAAGTCGATATTG 310
BSNT_00480___ 314 TCGCTCACAGTATGGGGGGCGCGAACACACTTTACTACATAAAAAATCTG 363
||||.|||||.|||||.||.||.||.||.||.||.||.||.|||||||||
BL05255___lip 311 TCGCCCACAGCATGGGCGGGGCCAATACGCTCTATTATATTAAAAATCTG 360
BSNT_00480___ 364 GACG--GCGGAAATAAAGTTGCAAACGTCGTGACGCTTGGCGGCGCGAAC 411
||.| |||| |||||||.|.|.|.|||||.||.|||||.|||||.||.
BL05255___lip 361 GATGGTGCGG--ATAAAGTCGGACATGTCGTCACCCTTGGGGGCGCTAAT 408
BSNT_00480___ 412 CGTTTGACG--ACAGGCAAGGCGCTTCCGGGAACAGATCCAAATCAAAAG 459
|||.| || |||..||.|||||.||.| |||.|.||.
BL05255___lip 409 CGTCT--CGTTACAAACACGGCGCCTCAG------------AATGACAAA 444
BSNT_00480___ 460 ATTTTATACACATCCATTTACAGCAGTGCCGA-TATGATTGTCATGAATT 508
||.|.||||||.||.||||||||||....||| ||| ||.|||.|.||..
BL05255___lip 445 ATCTCATACACTTCGATTTACAGCACAAGCGACTAT-ATCGTCTTAAACA 493
BSNT_00480___ 509 ACTTATCAAGATTAGATGGTGCTAGAAACGTTCAAATC-CATGGCGTTGG 557
.|.|.||.|.|.|.||||||||.|..||.||.|||||| || |||||..|
BL05255___lip 494 GCCTCTCCAAACTTGATGGTGCAAACAATGTGCAAATCTCA-GGCGTAAG 542
BSNT_00480___ 558 ACACATCGGCCTTCTGTACAGCAGCCAAGTCAACAGCC-TGATTAAAGAA 606
.||..||||.|||.|||.|||||||.|||| ||..||| ||||||||||.
BL05255___lip 543 CCATGTCGGTCTTTTGTTCAGCAGCAAAGT-AAATGCCTTGATTAAAGAC 591
BSNT_00480___ 607 GGGCTGAACGGCGGGGGCCAGAATACGAATTAA 639
|||||||.||.|.|.|| |||.|||
BL05255___lip 592 GGGCTGACCGCCAGCGG---------GAAATAA 615
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