Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01002 and BL05259
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_01002.1.5803.seq
# -bsequence dna-align/BL05259.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01002-BL05259.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01002-BL05259.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01002
# 2: BL05259
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 356
# Identity: 151/356 (42.4%)
# Similarity: 151/356 (42.4%)
# Gaps: 163/356 (45.8%)
# Score: 435.0
#
#
#=======================================
BSNT_01002 1 ATGGAACAGATGAAAATCACGA--ATTTAACAGACGAGCAAATCAGTTTT 48
||||||.|..| |||.|.||| |.|||||||.|||.|||||..|.|||
BL05259 1 ATGGAAAAATT--AAAGCTCGATGAATTAACAGGCGAACAAATTTGCTTT 48
BSNT_01002 49 CAGCTTATCCTGCACAGTGGCAATGCCCGCAGC------------TGCAT 86
|||||.||.||.|||||.||.||.||||||||| |.|||
BL05259 49 CAGCTCATTCTTCACAGCGGAAACGCCCGCAGCAAGGTTATTCAGTCCAT 98
BSNT_01002 87 CATACAATCACTGCGC-----GCCT--ACAAAGAAGGGAACAAGGATGAG 129
||...||| ||.|||| ||.| |.||||.|| ||||
BL05259 99 CAGGGAAT-ACCGCGCCGGCAGCGTTCAGAAAGCAG------AGGA---- 137
BSNT_01002 130 GCGGATGCCCTCATTGCCA-AGGCTGAGCAGGATTTATCCGC-GGCCCAT 177
|.||| |.|.| ||||.||..|.||||| .|.|| |.||||.
BL05259 138 ---GCTGC------TACAACAGGCAGAAGACGATTT-GCAGCAGTCCCAC 177
BSNT_01002 178 GACATTCACTTTCAAATGATACAAAAGGAATCCGGC-----------TGA 216
||.|||||.|||||||||||.|||||.|||.|.||| |||
BL05259 178 GATATTCATTTTCAAATGATCCAAAAAGAAGCGGGCGGGGGAAAAAATGA 227
BSNT_01002 216 -------------------------------------------------- 216
BL05259 228 GTTCTCTTTGCTGCTCTTGCATGCCGAGGACCATTTGATGTCGACGCTCA 277
BSNT_01002 216 -------------------------------------------------- 216
BL05259 278 CGATGAAGGAACTCGTTTCTGAATTATTGGAATTGTTCAAAGAGAAAAGT 327
BSNT_01002 216 ------ 216
BL05259 328 CTATGA 333
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