Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03589 and BL05262

See Amino acid alignment / Visit BSNT_03589 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_03589___yqzF.1.5803.seq
#    -bsequence dna-align/BL05262___yqzF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03589___yqzF-BL05262___yqzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03589___yqzF-BL05262___yqzF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03589___yqzF
# 2: BL05262___yqzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 267
# Identity:     170/267 (63.7%)
# Similarity:   170/267 (63.7%)
# Gaps:          42/267 (15.7%)
# Score: 540.5
# 
#
#=======================================

BSNT_03589___      1 ---------ATGAGCCGACTTCTTGCGCTTTTAATATTAG-TCATCCCCG     40
                              ||||.|..|||.||.|   ||||       | |.|||||.|
BL05262___yqz      1 ATGGGGAGAATGATCGCACTGCTCG---TTTT-------GCTGATCCCGG     40

BSNT_03589___     41 G-GGCTATTTCTGCTTTAGGCATTAAACTGATGAGAGATACACTTTTCGG     89
                     | ||| .|..|||||.|.||.||||||.|||||.|.||.||..|||||||
BL05262___yqz     41 GAGGC-CTGGCTGCTCTCGGAATTAAATTGATGCGCGACACGGTTTTCGG     89

BSNT_03589___     90 CCATACAATCAAGCCATTTTCAGCT-CTTTGGCTCCAAGGGTTGTCAGGA    138
                     |..|...||| .|||..||||||.| ||||||||.||.|||.||.|.||.
BL05262___yqz     90 CATTTTGATC-GGCCCGTTTCAGATCCTTTGGCTTCAGGGGCTGGCGGGG    138

BSNT_03589___    139 TTCATCTTTTTTGCGATCGGCCTCTATGTGCTGGCCGGGTTCATTTTATA    188
                     |||||.|..||.||...||||||.|||.||.|.|.|||.||.|||.||||
BL05262___yqz    139 TTCATATGCTTCGCAGGCGGCCTTTATTTGTTAGGCGGATTTATTCTATA    188

BSNT_03589___    189 CAGAGACAGAAAACGCAATCAAGTCAGCCCGCGATTCAGAAAA-------    231
                     ||||||||||||||||||.|||||.|||||.||.|||||||||       
BL05262___yqz    189 CAGAGACAGAAAACGCAACCAAGTAAGCCCCCGTTTCAGAAAAAAGCAGA    238

BSNT_03589___    232 -----CGATAG------    237
                          ||..||      
BL05262___yqz    239 GCGGCCGCGAGGTGTGA    255


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.