Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03600 and BL05263

See Amino acid alignment / Visit BSNT_03600 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:36
# Commandline: needle
#    -asequence dna-align/BSNT_03600___yqiK.1.5803.seq
#    -bsequence dna-align/BL05263.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03600___yqiK-BL05263.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03600___yqiK-BL05263.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03600___yqiK
# 2: BL05263
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     485/814 (59.6%)
# Similarity:   485/814 (59.6%)
# Gaps:         170/814 (20.9%)
# Score: 1406.0
# 
#
#=======================================

BSNT_03600___      1 ATGACAAAGATTTTTGCCCACCGGGGGGCATCAGGTCA-ATTTCCCGAAA     49
                     |||||.||.||.|||||.|||.|.|||||.||||| || .||||||||||
BL05263            1 ATGACGAAAATATTTGCACACAGAGGGGCTTCAGG-CACTTTTCCCGAAA     49

BSNT_03600___     50 ATACAATGCTTGCATTTGAAAAAGGA----------ATTGAAGCCGGAGC     89
                     ||||||||...||.|||    |||.|          |||      ||.||
BL05263           50 ATACAATGGCGGCGTTT----AAGCATGCGGCGGCCATT------GGTGC     89

BSNT_03600___     90 GGATGGGATAGAGCTTGATGTACAGCTGACGAAAGACGGACGCATTGTTG    139
                     .||.||.||.||..|.|||||.||..||.|.|||||||||||..||||||
BL05263           90 CGACGGCATCGAATTGGATGTTCAAATGGCAAAAGACGGACGTCTTGTTG    139

BSNT_03600___    140 TGATTCATGATGAAAGACTTAATCGCACGACATCACTTAAAGGATTCGTG    189
                     |.|||||||||||||..|||.|..|.|||||.|||||.|||||.|..|||
BL05263          140 TCATTCATGATGAAAAGCTTGACAGGACGACTTCACTGAAAGGGTATGTG    189

BSNT_03600___    190 AAGGATACAACCTATGATGAGGTAAAGACTGCGAATGCGGCCGCTGGTCA    239
                     ||.|||...||.|||||.||..|||| ||              .|||..|
BL05263          190 AAAGATCTTACATATGAGGAAATAAA-AC--------------ATGGAGA    224

BSNT_03600___    240 CGATCAAGCGTACAGCGAT------ATAAAA--------------GTGCC    269
                     ||  |||||   ||.||.|      |.||||              |||||
BL05263          225 CG--CAAGC---CACCGTTTTGCCGAAAAAACCGGTTCTGTCCCTGTGCC    269

BSNT_03600___    270 GCTGCTAGAAGATGTGCTCTCGTGGGCGGTAAAAAAGGATTTTCTCATCA    319
                     |...||.|||||.|||.|...||||||||.|.|....||.|||||..|.|
BL05263          270 GACCCTTGAAGAAGTGTTTGAGTGGGCGGCAGATGCTGAATTTCTTCTTA    319

BSNT_03600___    320 ACATTGAATTAAAAAACAGCGTGATCCGCTATGAGGGAATGGAAGAAAAA    369
                     |..|||||||.|||||||||.|.|||||||||||.||.||||||||||||
BL05263          320 ATGTTGAATTGAAAAACAGCATTATCCGCTATGAAGGGATGGAAGAAAAA    369

BSNT_03600___    370 GTGCTG--GAGGCAGTGAAGCG------ATTCAATGTAGAGGACAGAGTC    411
                     |||.||  ||.| |.|||||||      .|||||       |||.|..||
BL05263          370 GTGATGTCGATG-ATTGAAGCGTACGACCTTCAA-------GACCGGATC    411

BSNT_03600___    412 ATCCTATCCACCTTTAATCATGACAGCTTGGCGCTATGCGCCCGGCTTGC    461
                     ||.||.||..|.||.||||||||.|||.|.|||.|||||..|.|.||   
BL05263          412 ATTCTTTCATCATTCAATCATGAAAGCCTTGCGTTATGCCACAGACT---    458

BSNT_03600___    462 GCCGCATATCGAACGGGCAGTATTAACTTCAGATGTGCTTT---------    502
                          ..|||.|      ||||||.|.|| .|.||.|||||         
BL05263          459 -----GAATCCA------AGTATTGAATT-GGCTGCGCTTTACATGGATG    496

BSNT_03600___    503 --ATC----AGGCAGATCGATATATCGCGTCTATTCCGGCTTCCGGCTAT    546
                       |||    ||.|.||...|||.||.|.|...|||||||||||.||.|.|
BL05263          497 TCATCTACAAGCCGGAGGAATACATTGAGATGATTCCGGCTTCAGGATTT    546

BSNT_03600___    547 CACCCGAAGCTAAACAGCCCAGGGGTCA----CAGATGAAGTACTGAAGA    592
                     ||.|||.|.|      |||    |.|||    |.|||||  .|| ||..|
BL05263          547 CATCCGTATC------GCC----GTTCAATGTCGGATGA--CAC-GATCA    583

BSNT_03600___    593 AAATGAGGAACG---GTTTGATTAA--------GGTAAGGCCGTATACAG    631
                     ||      ||||   .|||||  ||        |||.|||||||..||..
BL05263          584 AA------AACGCCCATTTGA--AAGAAAAAGCGGTCAGGCCGTTCACCA    625

BSNT_03600___    632 TCAATCGTCCGGAAGATATGAAGCGTCTCATTGAAGCGGGAGCAGACGGC    681
                     ||||.|||...||.||.|||||....||.||||..||||||..||||||.
BL05263          626 TCAACCGTGAAGAGGAGATGAAAAAGCTGATTGCTGCGGGAATAGACGGT    675

BSNT_03600___    682 ATGTTTACCGACTTTCCAGAAAAGGC-TTCGGCATTGCTGAAAAATGAAT    730
                     .|.||.|||||||||||.|||||.|| ||            |||||.|| 
BL05263          676 TTCTTCACCGACTTTCCCGAAAAAGCGTT------------AAAATTAA-    712

BSNT_03600___    731 AG------------    732
                     ||            
BL05263          713 AGGCCGAGATGTGA    726


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